Highly conserved s2m element of SARS-CoV-2 dimerizes via a kissing complex and interacts with host miRNA-1307-3p von Imperatore, Joshua A, Cunningham, Caylee L, Pellegrene, Kendy A, Brinson, Robert G, Marino, John P, Evanseck, Jeffrey D, Mihailescu, Mihaela Rita

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Delta variant versus ancestral SARS-CoV-2 s2m dynamics and relative entropy von Makowski, Joseph A., Kensinger, Adam H., Pellegrene, Kendy A., Cunningham, Caylee, Frye, Caleb J., Lackey, Patrick E., Mihailescu, Mihaela-Rita, Evanseck, Jeffrey D.

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Uridylation of the histone mRNA stem-loop weakens binding interactions with SLBP while maintaining interactions with 3'hExo von Shine, Morgan, Harris, Sarah E., Pellegrene, Kendy A., Kensinger, Adam H., Mihailescu, Mihaela Rita, Evanseck, Jeffrey D., Lackey, Patrick E.

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Structural and thermodynamic consequences of the G31U and U5C mutations in the SARS-CoV-2 s2m von Kensinger, Adam H., Makowski, Joseph A., Pellegrene, Kendy A., Cunningham, Caylee L., Frye, Caleb J., Lackey, Patrick E., Mihailescu, Mihaela-Rita, Evanseck, Jeffrey D.

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A Role for Fragment-Based Drug Design in Developing Novel Lead Compounds for Central Nervous System Targets von Wasko, Michael J, Pellegrene, Kendy A, Madura, Jeffry D, Surratt, Christopher K

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Structural, Dynamical, and Entropic Differences between SARS-CoV and SARS-CoV‑2 s2m Elements Using Molecular Dynamics Simulations von Kensinger, Adam H., Makowski, Joseph A., Pellegrene, Kendy A., Imperatore, Joshua A., Cunningham, Caylee L., Frye, Caleb J., Lackey, Patrick E., Mihailescu, Mihaela Rita, Evanseck, Jeffrey D.

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Biophysical Characterization and Computational Modeling of Histone mRNA Degradation Intermediates von Shine, Morgan, Pellegrene, Kendy, Mihailescu, Mihaela, Evanseck, Jeffrey, Lackey, Patrick

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Energy Landscape of the Complex Between the RGG Box Domain of Fragile-X Mental Retardation Protein and an RNA G-quadruplex von Pellegrene, Kendy A., Mihailescu, Mihaela-Rita, Evanseck, Jeffrey D.

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Characterization of the Interactions of Fragile-X Mental Retardation Protein with C9orf72 Repeat Expanded RNA von Pellegrene, Kendy A., Rita Mihailescu, Mihaela, Evanseck, Jeffrey D.

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Molecular Dynamic Simulations of Folding and Dimerization in Mutations Found in the s2m Motif of SARS‐Cov‐2 von Mackenstein, Nicole, Pellegrene, Kendy, Shine, Morgan, Lackey, Patrick, Mihailescu, Mihaela‐Rita, Evanseck, Jeffery

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Computational and Biophysical Analysis of RNA/Protein Complexes in Histone mRNA Degradation von Lackey, Patrick, Shine, Morgan, Mackenstein, Nicole, Pellegrene, Kendy, Evanseck, Jeffrey D., Mihailescu, Mihaela R.

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G Quadruplex and Stem Interactions in RGG Box Domain Recognition von Pellegrene, Kendy A., Mihailescu, Mihaela-Rita, Evanseck, Jeffrey D.

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Conserved Elements in the 3'-UTR of SARS-CoV-2: Involvement in Genomic Dimerization and Interactions with Cellular Micrornas von Imperatore, Joshua A., Cunningham, Caylee L., Frye, Caleb J., Pellegrene, Kendy A., Evanseck, Jeffrey D., Mihailescu, Mihaela-Rita

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Enhanced Sampling of the SARS-CoV-2 s2m Element von Kensinger, Adam H., Pellegrene, Kendy A., Imperatore, Joshua, Srnec, Matthew N., Mihailescu, Mihaela-Rita, Evanseck, Jeffrey D.

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Characterization of SARS-CoV-2 Conserved Elements’ Structures and their RNA-RNA Interactions von Cunningham, Caylee, Imperatore, Joshua, Milback, Ella, Shine, Morgan, Pellegrene, Kendy A., Lackey, Patrick, Evanseck, Jeffrey D., Mihailescu, Mihaela-Rita

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Structural and dynamical impact of the two-nucleotide difference in sequence between SARS-CoV and SARS-CoV-2 s2m using molecular dynamics von Kensinger, Adam H., Pellegrene, Kendy A., Makowski, Joseph A., Cunningham, Caylee L., Frye, Caleb J., Mihailescu, Mihaela-Rita, Evanseck, Jeffrey D.

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Viral-host RNA-RNA interactions in SARS-CoV-2: study of MIR-760-3p interactions with the genome 3'-untranslated region von Frye, Caleb J., Cunningham, Caylee L., Pellegrene, Kendy A., Kensinger, Adam H., Makowski, Joseph A., Evanseck, Jeffrey D., Mihailescu, Mihaela-Rita

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Characterization of the S2M G15U mutation associated with the SARS-CoV-2 delta variant von Cunningham, Caylee L., Frye, Caleb J., Imperatore, Joshua A., Pellegrene, Kendy A., Kensinger, Adam H., Makowski, Joseph A., Shine, Morgan, Lackey, Patrick, Evanseck, Jeffrey D., Mihailescu, Mihaela-Rita

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Stem-loop II motif (s2m) structural and dynamical differences between SARS-CoV-2 and b.1.617.2 (Delta) variant von Makowski, Joseph A., Kensinger, Adam H., Pellegrene, Kendy A., Cunningham, Caylee, Frye, Caleb J., Shine, Morgan, Bojanac, Izayah, Lackey, Patrick, Mihailescu, Mihaela-Rita, Evanseck, Jeffrey D.

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Condensed Liquid Phase 3D Structure of SARS-CoV-2 s2m Guided by NMR Spectroscopy von Pellegrene, Kendy A., Imperatore, Joshua A., Cunningham, Caylee L., Kensinger, Adam H., Mihailescu, Petru, Srnec, Matthew N., Mihailescu, Mihaela-Rita, Evanseck, Jeffrey D.

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