Phosphorylation of CRTC3 by the salt-inducible kinases controls the interconversion of classically activated and regulatory macrophages von Clark, Kristopher, MacKenzie, Kirsty F, Petkevicius, Kasparas, Kristariyanto, Yosua, Zhang, Jiazhen, Choi, Hwan Geun, Peggie, Mark, Plater, Lorna, Pedrioli, Patrick G. A, McIver, Ed, Gray, Nathanael S, Arthur, J. Simon C, Cohen, Philip

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Surfaceome dynamics reveal proteostasis-independent reorganization of neuronal surface proteins during development and synaptic plasticity von van Oostrum, Marc, Campbell, Benjamin, Seng, Charlotte, Müller, Maik, tom Dieck, Susanne, Hammer, Jacqueline, Pedrioli, Patrick G. A., Földy, Csaba, Tyagarajan, Shiva K., Wollscheid, Bernd

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Ubiquitin-related modifier Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA von Peter, Matthias, Pedrioli, Patrick G. A, Hofmann, Kay, Leidel, Sebastian, Costanzo, Michael, Bucher, Tamara, Brost, Renée, Boone, Charles, Schmidt, Alexander, Aebersold, Ruedi

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Proteogenetic drug response profiling elucidates targetable vulnerabilities of myelofibrosis von Wildschut, Mattheus H. E., Mena, Julien, Dördelmann, Cyril, van Oostrum, Marc, Hale, Benjamin D., Settelmeier, Jens, Festl, Yasmin, Lysenko, Veronika, Schürch, Patrick M., Ring, Alexander, Severin, Yannik, Bader, Michael S., Pedrioli, Patrick G. A., Goetze, Sandra, van Drogen, Audrey, Balabanov, Stefan, Skoda, Radek C., Lopes, Massimo, Wollscheid, Bernd, Theocharides, Alexandre P. A., Snijder, Berend

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Hydrophilic Strong Anion Exchange (hSAX) Chromatography for Highly Orthogonal Peptide Separation of Complex Proteomes von Ritorto, Maria Stella, Cook, Ken, Tyagi, Kshitiz, Pedrioli, Patrick G. A, Trost, Matthias

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Activation of the canonical IKK complex by K63/M1-linked hybrid ubiquitin chains von Emmerich, Christoph H., Ordureau, Alban, Strickson, Sam, Arthur, J. Simon C., Pedrioli, Patrick G. A., Komander, David, Cohen, Philip

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Phosphorylation of Parkin at Serine65 is essential for activation: elaboration of a Miro1 substrate-based assay of Parkin E3 ligase activity von Kazlauskaite, Agne, Kelly, Van, Johnson, Clare, Baillie, Carla, Hastie, C. James, Peggie, Mark, Macartney, Thomas, Woodroof, Helen I., Alessi, Dario R., Pedrioli, Patrick G. A., Muqit, Miratul M. K.

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Author Correction: Surfaceome dynamics reveal proteostasis-independent reorganization of neuronal surface proteins during development and synaptic plasticity von van Oostrum, Marc, Campbell, Benjamin, Seng, Charlotte, Müller, Maik, Dieck, Susanne tom, Hammer, Jacqueline, Pedrioli, Patrick G. A., Földy, Csaba, Tyagarajan, Shiva K., Wollscheid, Bernd

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Trans-Proteomic Pipeline: A Pipeline for Proteomic Analysis von Pedrioli, Patrick G. A.

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Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial von Čuklina, Jelena, Lee, Chloe H, Williams, Evan G, Sajic, Tatjana, Collins, Ben C, Rodríguez Martínez, María, Sharma, Varun S, Wendt, Fabian, Goetze, Sandra, Keele, Gregory R, Wollscheid, Bernd, Aebersold, Ruedi, Pedrioli, Patrick G A

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Reproducible Determination of High-Density Lipoprotein Proteotypes von Goetze, Sandra, Frey, Kathrin, Rohrer, Lucia, Radosavljevic, Silvija, Krützfeldt, Jan, Landmesser, Ulf, Bueter, Marco, Pedrioli, Patrick G. A, von Eckardstein, Arnold, Wollscheid, Bernd

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Classification of mouse B cell types using surfaceome proteotype maps von van Oostrum, Marc, Müller, Maik, Klein, Fabian, Bruderer, Roland, Zhang, Hui, Pedrioli, Patrick G. A., Reiter, Lukas, Tsapogas, Panagiotis, Rolink, Antonius, Wollscheid, Bernd

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tRNA tKᵁᵁᵁ, tQᵁᵁᴳ, and tEᵁᵁC wobble position modifications fine-tune protein translation by promoting ribosome A-site binding von Rezgui, Vanessa Anissa Nathalie, Tyagi, Kshitiz, Ranjan, Namit, Konevega, Andrey L, Mittelstaet, Joerg, Rodnina, Marina V, Peter, Matthias, Pedrioli, Patrick G A

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PGE2 Induces Macrophage IL-10 Production and a Regulatory-like Phenotype via a Protein Kinase A–SIK–CRTC3 Pathway von MacKenzie, Kirsty F., Clark, Kristopher, Naqvi, Shaista, McGuire, Victoria A., Nöehren, Gesa, Kristariyanto, Yosua, van den Bosch, Mirjam, Mudaliar, Manikhandan, McCarthy, Pierre C., Pattison, Michael J., Pedrioli, Patrick G. A., Barton, Geoff J., Toth, Rachel, Prescott, Alan, Arthur, J. Simon C.

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Protein degradation and dynamic tRNA thiolation fine-tune translation at elevated temperatures von Tyagi, Kshitiz, Pedrioli, Patrick G A

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High-throughput identification of repurposable neuroactive drugs with potent anti-glioblastoma activity von Lee, Sohyon, Weiss, Tobias, Bühler, Marcel, Mena, Julien, Lottenbach, Zuzanna, Wegmann, Rebekka, Sun, Miaomiao, Bihl, Michel, Augustynek, Bartłomiej, Baumann, Sven P., Goetze, Sandra, van Drogen, Audrey, Pedrioli, Patrick G. A., Penton, David, Festl, Yasmin, Buck, Alicia, Kirschenbaum, Daniel, Zeitlberger, Anna M., Neidert, Marian C., Vasella, Flavio, Rushing, Elisabeth J., Wollscheid, Bernd, Hediger, Matthias A., Weller, Michael, Snijder, Berend

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high-quality catalog of the Drosophila melanogaster proteome von Brunner, E, Ahrens, C.H, Mohanty, S, Baetschmann, H, Loevenich, S, Potthast, F, Deutsch, E.W, Panse, C, Lichtenberg, U. de, Rinner, O

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RNAi-based screening identifies the Mms22L-Nfkbil2 complex as a novel regulator of DNA replication in human cells von Piwko, Wojciech, Olma, Michael H, Held, Michael, Bianco, Julien N, Pedrioli, Patrick G A, Hofmann, Kay, Pasero, Philippe, Gerlich, Daniel W, Peter, Matthias

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Review of Batch Effects Prevention, Diagnostics, and Correction Approaches von Čuklina, Jelena, Pedrioli, Patrick G. A., Aebersold, Ruedi

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Mitochondrial NAD+ Controls Nuclear ARTD1-Induced ADP-Ribosylation von Hopp, Ann-Katrin, Teloni, Federico, Bisceglie, Lavinia, Gondrand, Corentin, Raith, Fabio, Nowak, Kathrin, Muskalla, Lukas, Howald, Anna, Pedrioli, Patrick G.A., Johnsson, Kai, Altmeyer, Matthias, Pedrioli, Deena M. Leslie, Hottiger, Michael O.

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