Detecting SARS-CoV-2 lineages and mutational load in municipal wastewater and a use-case in the metropolitan area of Thessaloniki, Greece von Pechlivanis, Nikolaos, Tsagiopoulou, Maria, Maniou, Maria Christina, Togkousidis, Anastasis, Mouchtaropoulou, Evangelia, Chassalevris, Taxiarchis, Chaintoutis, Serafeim C., Petala, Maria, Kostoglou, Margaritis, Karapantsios, Thodoris, Laidou, Stamatia, Vlachonikola, Elisavet, Chatzidimitriou, Anastasia, Papadopoulos, Agis, Papaioannou, Nikolaos, Dovas, Chrysostomos I., Argiriou, Anagnostis, Psomopoulos, Fotis

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TRIP - T cell receptor/immunoglobulin profiler von Kotouza, Maria Th, Gemenetzi, Katerina, Galigalidou, Chrysi, Vlachonikola, Elisavet, Pechlivanis, Nikolaos, Agathangelidis, Andreas, Sandaltzopoulos, Raphael, Mitkas, Pericles A, Stamatopoulos, Kostas, Chatzidimitriou, Anastasia, Psomopoulos, Fotis E

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High risk HPV-positive women cervicovaginal microbial profiles in a Greek cohort: a retrospective analysis of the GRECOSELF study von Sofou, Electra, Gkoliou, Glykeria, Pechlivanis, Nikolaos, Pasentsis, Konstantinos, Chatzistamatiou, Kimon, Psomopoulos, Fotis, Agorastos, Theodoros, Stamatopoulos, Kostas

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UMIc: A Preprocessing Method for UMI Deduplication and Reads Correction von Tsagiopoulou, Maria, Maniou, Maria Christina, Pechlivanis, Nikolaos, Togkousidis, Anastasis, Kotrová, Michaela, Hutzenlaub, Tobias, Kappas, Ilias, Chatzidimitriou, Anastasia, Psomopoulos, Fotis

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Software pipelines for RNA-Seq, ChIP-Seq and germline variant calling analyses in common workflow language (CWL) von Kyritsis, Konstantinos A, Pechlivanis, Nikolaos, Psomopoulos, Fotis

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A Computational Framework for Pattern Detection on Unaligned Sequences: An Application on SARS-CoV-2 Data von Pechlivanis, Nikolaos, Togkousidis, Anastasios, Tsagiopoulou, Maria, Sgardelis, Stefanos, Kappas, Ilias, Psomopoulos, Fotis

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Intranuclear inclusions of polyQ-expanded ATXN1 sequester RNA molecules von Gkekas, Ioannis, Vagiona, Aimilia-Christina, Pechlivanis, Nikolaos, Kastrinaki, Georgia, Pliatsika, Katerina, Iben, Sebastian, Xanthopoulos, Konstantinos, Psomopoulos, Fotis E, Andrade-Navarro, Miguel A, Petrakis, Spyros

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Exploring plant diversity through soil DNA in Thai national parks for influencing land reform and agriculture planning von Osathanunkul, Maslin, Sawongta, Nipitpong, Pheera, Wittaya, Pechlivanis, Nikolaos, Psomopoulos, Fotis, Madesis, Panagiotis

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miRkit: R framework analyzing miRNA PCR array data von Tsagiopoulou, Maria, Togkousidis, Anastasis, Pechlivanis, Nikolaos, Maniou, Maria Christina, Batsali, Aristea, Matheakakis, Angelos, Pontikoglou, Charalampos, Psomopoulos, Fotis

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Evidence of somatic hypermutation in the antigen binding sites of patients with CLL harboring IGHV genes with 100% germline identity von Sofou, Electra, Zaragoza-Infante, Laura, Pechlivanis, Nikolaos, Karakatsoulis, Georgios, Notopoulou, Sofia, Stavroyianni, Niki, Psomopoulos, Fotis, Georgiou, Elisavet, de Septenville, Anne Langlois, Davi, Frederic, Agathangelidis, Andreas, Chatzidimitriou, Anastasia, Stamatopoulos, Kostas

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T cell receptor gene repertoire profiles in subgroups of patients with chronic lymphocytic leukemia bearing distinct genomic aberrations von Vlachonikola, Elisavet, Pechlivanis, Nikolaos, Karakatsoulis, Georgios, Sofou, Electra, Gkoliou, Glykeria, Jeromin, Sabine, Stavroyianni, Niki, Ranghetti, Pamela, Scarfo, Lydia, Österholm, Cecilia, Mansouri, Larry, Notopoulou, Sofia, Siorenta, Alexandra, Anagnostopoulos, Achilles, Ghia, Paolo, Haferlach, Claudia, Rosenquist, Richard, Psomopoulos, Fotis, Kouvatsi, Anastasia, Baliakas, Panagiotis, Stamatopoulos, Kostas, Chatzidimitriou, Anastasia

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Context‐dependent T‐cell Receptor Gene Repertoire Profiles in Proliferations of T Large Granular Lymphocytes von Assmann, Jorn L.J.C., Vlachonikola, Elisavet, Kolijn, Pieter M., Agathangelidis, Andreas, Pechlivanis, Nikolaos, Papalexandri, Apostolia, Stamatopoulos, Kostas, Chatzidimitriou, Anastasia, Langerak, Anton W.

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Antigen Receptor Gene Repertoire Profiling in Kidney Transplant Recipients Post-Sars-Cov-2 Vaccination von Mingos, Antonios, Pechlivanis, Nikolaos, Karakatsoulis, Georgios, Gkoliou, Glykeria, Vastarouchas, Nikolaos, Marinaki, Smaragdi, Tsoutsoura, Paraskevi, Papamentzelopoulou, Myrto, Pitiriga, Vassiliki, Psichogiou, Mina, Hatzakis, Angelos, Stamatopoulos, Kostas, Vlachonikola, Elisavet, Chatzidimitriou, Anastasia

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Distinct T Cell Receptor Gene Repertoires and T Cell Subset Distribution in Peripheral Blood and Bone Marrow of Patients with Multiple Myeloma von Gkoliou, Glykeria, Pechlivanis, Nikolaos, Chatzileontiadou, Sofia, Xydopoulou, Chara, Frouzaki, Christina, Karakatsoulis, Georgios, Vlachonikola, Elisavet, Gerousi, Marina, Psomopoulos, Fotis, Papaioannou, Maria, Chlichlia, Katerina, Stamatopoulos, Kostas, Hatjiharissi, Evdoxia, Chatzidimitriou, Anastasia

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An Immunogenetic Imprint of Ongoing Antigen Interactions in Hairy Cell Leukemia Expressing IGHV4-34 Receptors von Sofou, Electra, Karypidou, Maria, Zaragoza-Infante, Laura, Pechlivanis, Nikolaos, Psomopoulos, Fotis, Georgiou, Elisavet, Arons, Evgeny, Kreitman, Robert J., Chatzidimitriou, Anastasia, Stamatopoulos, Kostas

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Longitudinal Profiling of the T Cell Compartment in Patients with Chronic Lymphocytic Leukemia Treated with Venetoclax von Vlachonikola, Elisavet, Sofou, Electra, Gerousi, Marina, Katsika, Efthimia, Pechlivanis, Nikolaos, Karakatsoulis, Georgios, Dimou, Maria, Chatzikonstantinou, Thomas, Iskas, Michail, Panagiotidis, Panagiotis, Sakellari, Ioanna, Stavroyianni, Niki, Stamatopoulos, Kostas, Chatzidimitriou, Anastasia

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N-Glycosylation of the Ig Receptors Shapes the Antigen Reactivity in Chronic Lymphocytic Leukemia Subset #201 von Iatrou, Anastasia, Gounari, Maria, Sofou, Electra, Zaragoza-Infante, Laura, Markopoulos, Ioannis, Sarrigeorgiou, Ioannis, Petrakis, Georgios, Pechlivanis, Nikolaos, Roumeliotou-Dimou, Maria, Panayiotidis, Panagiotis, Stamatopoulos, Basile, Gkanidou, Maria, Sandaltzopoulos, Rafael, Degano, Massimo, Koletsa, Triantafyllia, Lymberi, Peggy, Psomopoulos, Fotis, Ghia, Paolo, Agathangelidis, Andreas, Chatzidimitriou, Anastasia, Stamatopoulos, Kostas

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Chromatin activation profiling of stereotyped chronic lymphocytic leukemias reveals a subset 8-specific signature von Tsagiopoulou, Maria, Chapaprieta, Vicente, Russiñol, Nuria, García Torre, Beatriz, Pechlivanis, Nikolaos, Nadeu, Ferran, Papakonstantinou, Nikos, Stavroyianni, Niki, Chatzidimitriou, Anastasia, Psomopoulos, Fotis, Campo Güerri, Elias, Stamatopoulos, Kostas, Martín-Subero, José Ignacio

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Chromatin activation profiling of stereotyped chronic lymphocytic leukemias reveals a subset 8–specific signature von Tsagiopoulou, Maria, Chapaprieta, Vicente, Russiñol, Nuria, García-Torre, Beatriz, Pechlivanis, Nikolaos, Nadeu, Ferran, Papakonstantinou, Nikos, Stavroyianni, Niki, Chatzidimitriou, Anastasia, Psomopoulos, Fotis, Campo, Elías, Stamatopoulos, Kostas, Martín-Subero, José Ignacio

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InterTADs: integration of multi-omics data on topologically associated domains, application to chronic lymphocytic leukemia von Tsagiopoulou, Maria, Pechlivanis, Nikolaos, Maniou, Maria Christina, Psomopoulos, Fotis

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