Distinct Gene Regulatory Pathways for Human Innate versus Adaptive Lymphoid Cells von Koues, Olivia I., Collins, Patrick L., Cella, Marina, Robinette, Michelle L., Porter, Sofia I., Pyfrom, Sarah C., Payton, Jacqueline E., Colonna, Marco, Oltz, Eugene M.

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CpG Island Hypermethylation Mediated by DNMT3A Is a Consequence of AML Progression von Spencer, David H., Russler-Germain, David A., Ketkar, Shamika, Helton, Nichole M., Lamprecht, Tamara L., Fulton, Robert S., Fronick, Catrina C., O’Laughlin, Michelle, Heath, Sharon E., Shinawi, Marwan, Westervelt, Peter, Payton, Jacqueline E., Wartman, Lukas D., Welch, John S., Wilson, Richard K., Walter, Matthew J., Link, Daniel C., DiPersio, John F., Ley, Timothy J.

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Association Between Mutation Clearance After Induction Therapy and Outcomes in Acute Myeloid Leukemia von Klco, Jeffery M, Miller, Christopher A, Griffith, Malachi, Petti, Allegra, Spencer, David H, Ketkar-Kulkarni, Shamika, Wartman, Lukas D, Christopher, Matthew, Lamprecht, Tamara L, Helton, Nicole M, Duncavage, Eric J, Payton, Jacqueline E, Baty, Jack, Heath, Sharon E, Griffith, Obi L, Shen, Dong, Hundal, Jasreet, Chang, Gue Su, Fulton, Robert, O'Laughlin, Michelle, Fronick, Catrina, Magrini, Vincent, Demeter, Ryan T, Larson, David E, Kulkarni, Shashikant, Ozenberger, Bradley A, Welch, John S, Walter, Matthew J, Graubert, Timothy A, Westervelt, Peter, Radich, Jerald P, Link, Daniel C, Mardis, Elaine R, DiPersio, John F, Wilson, Richard K, Ley, Timothy J

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PLAIDOH: a novel method for functional prediction of long non-coding RNAs identifies cancer-specific LncRNA activities von Pyfrom, Sarah C, Luo, Hong, Payton, Jacqueline E

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Enhancer Sequence Variants and Transcription-Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B-Cell Lymphoma von Koues, Olivia I., Kowalewski, Rodney A., Chang, Li-Wei, Pyfrom, Sarah C., Schmidt, Jennifer A., Luo, Hong, Sandoval, Luis E., Hughes, Tyler B., Bednarski, Jeffrey J., Cashen, Amanda F., Payton, Jacqueline E., Oltz, Eugene M.

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Determining subpopulation methylation profiles from bisulfite sequencing data of heterogeneous samples using DXM von Fong, Jerry, Gardner, Jacob R, Andrews, Jared M, Cashen, Amanda F, Payton, Jacqueline E, Weinberger, Kilian Q, Edwards, John R

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Epigenomic regulation of human T-cell leukemia virus by chromatin-insulator CTCF von Cheng, Xiaogang, Joseph, Ancy, Castro, Victor, Chen-Liaw, Alice, Skidmore, Zachary, Ueno, Takaharu, Fujisawa, Jun-ichi, Rauch, Daniel A, Challen, Grant A, Martinez, Michael P, Green, Patrick, Griffith, Malachi, Payton, Jacqueline E, Edwards, John R, Ratner, Lee

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Validation and interpretation of IGH and TCR clonality testing by Ion Torrent S5 NGS for diagnosis and disease monitoring in B and T cell cancers von Lay, Lindsay, Stroup, Brooke, Payton, Jacqueline E.

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Detection of FLT3 Internal Tandem Duplication in Targeted, Short-Read-Length, Next-Generation Sequencing Data von Spencer, David H, Abel, Haley J, Lockwood, Christina M, Payton, Jacqueline E, Szankasi, Philippe, Kelley, Todd W, Kulkarni, Shashikant, Pfeifer, John D, Duncavage, Eric J

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Mcl1 haploinsufficiency protects mice from Myc-induced acute myeloid leukemia von Xiang, Zhifu, Luo, Hui, Payton, Jacqueline E, Cain, Jennifer, Ley, Timothy J, Opferman, Joseph T, Tomasson, Michael H

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RAG-Mediated DNA Breaks Attenuate PU.1 Activity in Early B Cells through Activation of a SPIC-BCLAF1 Complex von Soodgupta, Deepti, White, Lynn S., Yang, Wei, Johnston, Rachel, Andrews, Jared M., Kohyama, Masako, Murphy, Kenneth M., Mosammaparast, Nima, Payton, Jacqueline E., Bednarski, Jeffrey J.

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Pathway-Specific Analysis of Gene Expression Data Identifies the PI3K/Akt Pathway as a Novel Therapeutic Target in Cervical Cancer von SCHWARZ, Julie K, PAYTON, Jacqueline E, GRIGSBY, Perry W, RASHMI, Ramachandran, TAO XIANG, YUNHE JIA, HUETTNER, Phyllis, ROGERS, Buck E, QIN YANG, WATSON, Mark, RADER, Janet S

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RAG-mediated DNA double-strand breaks activate a cell type-specific checkpoint to inhibit pre-B cell receptor signals von Bednarski, Jeffrey J, Pandey, Ruchi, Schulte, Emily, White, Lynn S, Chen, Bo-Ruei, Sandoval, Gabriel J, Kohyama, Masako, Haldar, Malay, Nickless, Andrew, Trott, Amanda, Cheng, Genhong, Murphy, Kenneth M, Bassing, Craig H, Payton, Jacqueline E, Sleckman, Barry P

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High throughput digital quantification of mRNA abundance in primary human acute myeloid leukemia samples von Payton, Jacqueline E, Grieselhuber, Nicole R, Chang, Li-Wei, Murakami, Mark, Geiss, Gary K, Link, Daniel C, Nagarajan, Rakesh, Watson, Mark A, Ley, Timothy J

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Mapping of Variable DNA Methylation Across Multiple Cell Types Defines a Dynamic Regulatory Landscape of the Human Genome von Gu, Junchen, Stevens, Michael, Xing, Xiaoyun, Li, Daofeng, Zhang, Bo, Payton, Jacqueline E, Oltz, Eugene M, Jarvis, James N, Jiang, Kaiyu, Cicero, Theodore, Costello, Joseph F, Wang, Ting

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A type I IFN-dependent DNA damage response regulates the genetic program and inflammasome activation in macrophages von Morales, Abigail J, Carrero, Javier A, Hung, Putzer J, Tubbs, Anthony T, Andrews, Jared M, Edelson, Brian T, Calderon, Boris, Innes, Cynthia L, Paules, Richard S, Payton, Jacqueline E, Sleckman, Barry P

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Array-Based Comparative Genomic Hybridization Identifies CDK4 and FOXM1 Alterations as Independent Predictors of Survival in Malignant Peripheral Nerve Sheath Tumor von JINSHENG YU, DESHMUKH, Hrishikesh, LINDBERG, Guy M, GUTMANN, Rebecca J, EMNETT, Ryan J, SALAVAGGIONE, Lorena, GUTMANN, David H, NAGARAJAN, Rakesh, WATSON, Mark A, PERRY, Arie, PAYTON, Jacqueline E, DUNHAM, Christopher, SCHEITHAUER, Bernd W, TIHAN, Tarik, PRAYSON, Richard A, GUHA, Abhijit, BRIDGE, Julia A, FERNER, Rosalie E

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Quantitative label-free proteomics for discovery of biomarkers in cerebrospinal fluid: assessment of technical and inter-individual variation von Perrin, Richard J, Payton, Jacqueline E, Malone, James P, Gilmore, Petra, Davis, Alan E, Xiong, Chengjie, Fagan, Anne M, Townsend, R Reid, Holtzman, David M

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HCoDES Reveals Chromosomal DNA End Structures with Single-Nucleotide Resolution von Dorsett, Yair, Zhou, Yanjiao, Tubbs, Anthony T., Chen, Bo-Ruei, Purman, Caitlin, Lee, Baeck-Seung, George, Rosmy, Bredemeyer, Andrea L., Zhao, Jiang-yang, Sodergen, Erica, Weinstock, George M., Han, Nathan D., Reyes, Alejandro, Oltz, Eugene M., Dorsett, Dale, Misulovin, Ziva, Payton, Jacqueline E., Sleckman, Barry P.

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cis-Regulatory Circuits Regulating NEK6 Kinase Overexpression in Transformed B Cells Are Super-Enhancer Independent von Huang, Yue, Koues, Olivia I., Zhao, Jiang-yang, Liu, Regina, Pyfrom, Sarah C., Payton, Jacqueline E., Oltz, Eugene M.

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