R Loops in the Regulation of Antibody Gene Diversification von Pavri, Rushad

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Interpretable deep learning reveals the role of an E-box motif in suppressing somatic hypermutation of AGCT motifs within human immunoglobulin variable regions von Tambe, Abhik, MacCarthy, Thomas, Pavri, Rushad

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PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC von Appel, Lisa-Marie, Franke, Vedran, Bruno, Melania, Grishkovskaya, Irina, Kasiliauskaite, Aiste, Kaufmann, Tanja, Schoeberl, Ursula E., Puchinger, Martin G., Kostrhon, Sebastian, Ebenwaldner, Carmen, Sebesta, Marek, Beltzung, Etienne, Mechtler, Karl, Lin, Gen, Vlasova, Anna, Leeb, Martin, Pavri, Rushad, Stark, Alexander, Akalin, Altuna, Stefl, Richard, Bernecky, Carrie, Djinovic-Carugo, Kristina, Slade, Dea

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DNA Replication Origins in Immunoglobulin Switch Regions Regulate Class Switch Recombination in an R-Loop-Dependent Manner von Wiedemann, Eva-Maria, Peycheva, Mihaela, Pavri, Rushad

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RIF1 integrates DNA repair and transcriptional requirements during the establishment of humoral immune responses von Kabrani, Eleni, Rahjouei, Ali, Berruezo-Llacuna, Maria, Ebeling, Svenja, Saha, Tannishtha, Altwasser, Robert, Delgado-Benito, Veronica, Pavri, Rushad, Di Virgilio, Michela

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RIF1 regulates early replication timing in murine B cells von Malzl, Daniel, Peycheva, Mihaela, Rahjouei, Ali, Gnan, Stefano, Klein, Kyle N., Nazarova, Mariia, Schoeberl, Ursula E., Gilbert, David M., Buonomo, Sara C. B., Di Virgilio, Michela, Neumann, Tobias, Pavri, Rushad

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Epigenetic targeting of activation-induced cytidine deaminase von Wang, Qiao, Oliveira, Thiago, Jankovic, Mila, Silva, Israel T., Hakim, Ofir, Yao, Kaihui, Gazumyan, Anna, Mayer, Christian T., Pavri, Rushad, Casellas, Rafael, Nussenzweig, Michel C., Robbiani, Davide F.

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PARP-1 Determines Specificity in a Retinoid Signaling Pathway via Direct Modulation of Mediator von Pavri, Rushad, Lewis, Brian, Kim, Tae-Kyung, Dilworth, F. Jeffrey, Erdjument-Bromage, Hediye, Tempst, Paul, de Murcia, Gilbert, Evans, Ronald, Chambon, Pierre, Reinberg, Danny

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Regulation of RNA polymerase II processivity by Spt5 is restricted to a narrow window during elongation von Fitz, Johanna, Neumann, Tobias, Pavri, Rushad

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DNA replication timing directly regulates the frequency of oncogenic chromosomal translocations von Peycheva, Mihaela, Neumann, Tobias, Malzl, Daniel, Nazarova, Mariia, Schoeberl, Ursula E., Pavri, Rushad

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Histone H2B Monoubiquitination Functions Cooperatively with FACT to Regulate Elongation by RNA Polymerase II von Pavri, Rushad, Zhu, Bing, Li, Guohong, Trojer, Patrick, Mandal, Subhrangsu, Shilatifard, Ali, Reinberg, Danny

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Spt5-mediated enhancer transcription directly couples enhancer activation with physical promoter interaction von Fitz, Johanna, Neumann, Tobias, Steininger, Monika, Wiedemann, Eva-Maria, Garcia, Adriana Cantoran, Athanasiadis, Alexander, Schoeberl, Ursula E., Pavri, Rushad

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A de novo transcription-dependent TAD boundary underpins critical multiway interactions during antibody class switch recombination von Costea, Julia, Schoeberl, Ursula E., Malzl, Daniel, von der Linde, Maximilian, Fitz, Johanna, Gupta, Ankit, Makharova, Marina, Goloborodko, Anton, Pavri, Rushad

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B Cell Super-Enhancers and Regulatory Clusters Recruit AID Tumorigenic Activity von Qian, Jason, Wang, Qiao, Dose, Marei, Pruett, Nathanael, Kieffer-Kwon, Kyong-Rim, Resch, Wolfgang, Liang, Genqing, Tang, Zhonghui, Mathé, Ewy, Benner, Christopher, Dubois, Wendy, Nelson, Steevenson, Vian, Laura, Oliveira, Thiago Y., Jankovic, Mila, Hakim, Ofir, Gazumyan, Anna, Pavri, Rushad, Awasthi, Parirokh, Song, Bin, Liu, Geng, Chen, Longyun, Zhu, Shida, Feigenbaum, Lionel, Staudt, Louis, Murre, Cornelis, Ruan, Yijun, Robbiani, Davide F., Pan-Hammarström, Qiang, Nussenzweig, Michel C., Casellas, Rafael

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Activation-Induced Cytidine Deaminase Targets DNA at Sites of RNA Polymerase II Stalling by Interaction with Spt5 von Pavri, Rushad, Gazumyan, Anna, Jankovic, Mila, Di Virgilio, Michela, Klein, Isaac, Ansarah-Sobrinho, Camilo, Resch, Wolfgang, Yamane, Arito, San-Martin, Bernardo Reina, Barreto, Vasco, Nieland, Thomas J., Root, David E., Casellas, Rafael, Nussenzweig, Michel C.

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PARP-1 determines specificity in a retinoid signaling pathway via direct modulation of mediator von Pavri, Rushad, Lewis, Brian, Kim, Tae-Kyung, Dilworth, F Jeffrey, Erdjument-Bromage, Hediye, Tempst, Paul, de Murcia, Gilbert, Evans, Ronald, Chambon, Pierre, Reinberg, Danny

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