MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data von Doster, Enrique, Lakin, Steven M, Dean, Christopher J, Wolfe, Cory, Young, Jared G, Boucher, Christina, Belk, Keith E, Noyes, Noelle R, Morley, Paul S

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MEGARes: an antimicrobial resistance database for high throughput sequencing von Lakin, Steven M, Dean, Chris, Noyes, Noelle R, Dettenwanger, Adam, Ross, Anne Spencer, Doster, Enrique, Rovira, Pablo, Abdo, Zaid, Jones, Kenneth L, Ruiz, Jaime, Belk, Keith E, Morley, Paul S, Boucher, Christina

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Succinct colored de Bruijn graphs von Muggli, Martin D, Bowe, Alexander, Noyes, Noelle R, Morley, Paul S, Belk, Keith E, Raymond, Robert, Gagie, Travis, Puglisi, Simon J, Boucher, Christina

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Mycoplasma bovis is associated with Mannheimia haemolytica during acute bovine respiratory disease in feedlot cattle von Valeris-Chacin, Robert, Powledge, Sherri, McAtee, Taylor, Morley, Paul S., Richeson, John

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Using a multi-omics approach to explore potential associations with rumen content and serum of cows with different milk production levels based on genomic predicted transmitting ab... von Ravelo, Anay D, Ferm, Peter, Guo, Yue, Omontese, Bobwealth O, Morley, Paul S, Chen, Chi, Noyes, Noelle R, Caixeta, Luciano S

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Characterization and comparison of the microbiomes and resistomes of colostrum from selectively treated dry cows von Vasquez, Amy, Nydam, Daryl, Foditsch, Carla, Warnick, Lorin, Wolfe, Cory, Doster, Enrique, Morley, Paul S.

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Risk factors for shedding of Salmonella enterica among hospitalized large animals over a 10‐year period in a veterinary teaching hospital von Burgess, Brandy A., Morley, Paul S.

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Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain von Yang, Xiang, Noyes, Noelle R, Doster, Enrique, Martin, Jennifer N, Linke, Lyndsey M, Magnuson, Roberta J, Yang, Hua, Geornaras, Ifigenia, Woerner, Dale R, Jones, Kenneth L, Ruiz, Jaime, Boucher, Christina, Morley, Paul S, Belk, Keith E

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Effectiveness of stabilization methods for the immediate and short-term preservation of bovine fecal and upper respiratory tract genomic DNA von Pinnell, Lee J, Wolfe, Cory A, Castle, Jake, Crosby, William B, Doster, Enrique, Morley, Paul S

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Genomic diversity of class I integrons from antimicrobial resistant strains of Salmonella Typhimurium isolated from livestock, poultry and humans von Rao, Sangeeta, Linke, Lyndsey, Doster, Enrique, Hyatt, Doreene, Burgess, Brandy A, Magnuson, Roberta, Pabilonia, Kristy L, Morley, Paul S

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Characterization of the Microbial Resistome in Conventional and “Raised Without Antibiotics” Beef and Dairy Production Systems von Rovira, Pablo, McAllister, Tim, Lakin, Steven M., Cook, Shaun R., Doster, Enrique, Noyes, Noelle R., Weinroth, Maggie D., Yang, Xiang, Parker, Jennifer K., Boucher, Christina, Booker, Calvin W., Woerner, Dale R., Belk, Keith E., Morley, Paul S.

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ACVIM‐Endorsed Statements: Consensus statements, evidence‐based practice guidelines and systematic reviews von Hinchcliff, Kenneth W., Morley, Paul S., DiBartola, Stephen P., Taylor, Sandra D., Harrell, Karyn A.

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Not All Liver Abscesses Are Created Equal: The Impact of Tylosin and Antibiotic Alternatives on Bovine Liver Abscess Microbial Communities and a First Look at Bacteroidetes-Dominat... von Pinnell, Lee J, Whitlow, Carla Weissend, Huebner, Katherine L, Bryant, Tony C, Martin, Jennifer, Belk, Keith E, Morley, Paul S

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No Change in Risk for Antibiotic-Resistant Salmonellosis from Beef, United States, 2002-2010 von Costard, Solenne, Pouzou, Jane G, Belk, Keith E, Morley, Paul S, Schmidt, John W, Wheeler, Tommy L, Arthur, Terrance M, Zagmutt, Francisco J

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Resistome diversity in cattle and the environment decreases during beef production von Noyes, Noelle R, Yang, Xiang, Linke, Lyndsey M, Magnuson, Roberta J, Dettenwanger, Adam, Cook, Shaun, Geornaras, Ifigenia, Woerner, Dale E, Gow, Sheryl P, McAllister, Tim A, Yang, Hua, Ruiz, Jaime, Jones, Kenneth L, Boucher, Christina A, Morley, Paul S, Belk, Keith E

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Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent von Zaheer, Rahat, Lakin, Steven M, Polo, Rodrigo Ortega, Cook, Shaun R, Larney, Francis J, Morley, Paul S, Booker, Calvin W, Hannon, Sherry J, Van Domselaar, Gary, Read, Ron R, McAllister, Tim A

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Effects of respiratory virus vaccination and bovine respiratory disease on the respiratory microbiome of feedlot cattle von McAtee, Taylor B, Pinnell, Lee J, Powledge, Sherri A, Wolfe, Cory A, Morley, Paul S, Richeson, John T

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Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period von Doster, Enrique, Rovira, Pablo, Noyes, Noelle R, Burgess, Brandy A, Yang, Xiang, Weinroth, Margaret D, Lakin, Steven M, Dean, Christopher J, Linke, Lyndsey, Magnuson, Roberta, Jones, Kenneth I, Boucher, Christina, Ruiz, Jamie, Belk, Keith E, Morley, Paul S

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Antimicrobial Resistance in Escherichia coli Recovered from Feedlot Cattle and Associations with Antimicrobial Use von Benedict, Katharine M, Gow, Sheryl P, McAllister, Tim A, Booker, Calvin W, Hannon, Sherry J, Checkley, Sylvia L, Noyes, Noelle R, Morley, Paul S

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Pneumonic Plague in a Dog and Widespread Potential Human Exposure in a Veterinary Hospital, United States von Schaffer, Paula A, Brault, Stephanie A, Hershkowitz, Connor, Harris, Lauren, Dowers, Kristy, House, Jennifer, Aboellail, Tawfik A, Morley, Paul S, Daniels, Joshua B

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