New tools for the analysis and validation of cryo‐EM maps and atomic models von Afonine, Pavel V., Klaholz, Bruno P., Moriarty, Nigel W., Poon, Billy K., Sobolev, Oleg V., Terwilliger, Thomas C., Adams, Paul D., Urzhumtsev, Alexandre

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Polder maps: improving OMIT maps by excluding bulk solvent von Liebschner, Dorothee, Afonine, Pavel V., Moriarty, Nigel W., Poon, Billy K., Sobolev, Oleg V., Terwilliger, Thomas C., Adams, Paul D.

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EMRinger: side chain–directed model and map validation for 3D cryo-electron microscopy von Barad, Benjamin A, Echols, Nathaniel, Wang, Ray Yu-Ruei, Cheng, Yifan, DiMaio, Frank, Adams, Paul D, Fraser, James S

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Automated map sharpening by maximization of detail and connectivity von Terwilliger, Thomas C., Sobolev, Oleg V., Afonine, Pavel V., Adams, Paul D.

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MolProbity: More and better reference data for improved all‐atom structure validation von Williams, Christopher J., Headd, Jeffrey J., Moriarty, Nigel W., Prisant, Michael G., Videau, Lizbeth L., Deis, Lindsay N., Verma, Vishal, Keedy, Daniel A., Hintze, Bradley J., Chen, Vincent B., Jain, Swati, Lewis, Steven M., Arendall, W. Bryan, Snoeyink, Jack, Adams, Paul D., Lovell, Simon C., Richardson, Jane S., Richardson, David C.

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A fully automatic method yielding initial models from high-resolution cryo-electron microscopy maps von Terwilliger, Thomas C., Adams, Paul D., Afonine, Pavel V., Sobolev, Oleg V.

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Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production von Alonso-Gutierrez, Jorge, Chan, Rossana, Batth, Tanveer S., Adams, Paul D., Keasling, Jay D., Petzold, Christopher J., Lee, Taek Soon

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Employing a biochemical protecting group for a sustainable indigo dyeing strategy von Hsu, Tammy M, Welner, Ditte H, Russ, Zachary N, Cervantes, Bernardo, Prathuri, Ramya L, Adams, Paul D, Dueber, John E

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electronic Ligand Builder and Optimization Workbench (eLBOW): a tool for ligand coordinate and restraint generation von Moriarty, Nigel W., Grosse-Kunstleve, Ralf W., Adams, Paul D.

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A New Generation of Crystallographic Validation Tools for the Protein Data Bank von Read, Randy J., Adams, Paul D., Arendall, W. Bryan, Brunger, Axel T., Emsley, Paul, Joosten, Robbie P., Kleywegt, Gerard J., Krissinel, Eugene B., Lütteke, Thomas, Otwinowski, Zbyszek, Perrakis, Anastassis, Richardson, Jane S., Sheffler, William H., Smith, Janet L., Tickle, Ian J., Vriend, Gert, Zwart, Peter H.

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FEM: feature-enhanced map von Afonine, Pavel V., Moriarty, Nigel W., Mustyakimov, Marat, Sobolev, Oleg V., Terwilliger, Thomas C., Turk, Dusan, Urzhumtsev, Alexandre, Adams, Paul D.

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The cryo-electron microscopy structure of human transcription factor IIH von Greber, Basil J., Nguyen, Thi Hoang Duong, Fang, Jie, Afonine, Pavel V., Adams, Paul D., Nogales, Eva

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Phaser.MRage: automated molecular replacement von Bunkóczi, Gábor, Echols, Nathaniel, McCoy, Airlie J., Oeffner, Robert D., Adams, Paul D., Read, Randy J.

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Enhancing fatty acid production by the expression of the regulatory transcription factor FadR von Zhang, Fuzhong, Ouellet, Mario, Batth, Tanveer S., Adams, Paul D., Petzold, Christopher J., Mukhopadhyay, Aindrila, Keasling, Jay D.

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PHENIX: a comprehensive Python-based system for macromolecular structure solution von Adams, Paul D., Afonine, Pavel V., Bunkóczi, Gábor, Chen, Vincent B., Davis, Ian W., Echols, Nathaniel, Headd, Jeffrey J., Hung, Li-Wei, Kapral, Gary J., Grosse-Kunstleve, Ralf W., McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert, Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C., Zwart, Peter H.

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Modelling dynamics in protein crystal structures by ensemble refinement von Burnley, B Tom, Afonine, Pavel V, Adams, Paul D, Gros, Piet

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Accurate model annotation of a near-atomic resolution cryo-EM map von Hryc, Corey F., Chen, Dong-Hua, Afonine, Pavel V., Jakana, Joanita, Wang, Zhao, Haase-Pettingell, Cameron, Jiang, Wen, Adams, Paul D., King, Jonathan A., Schmid, Michael F., Chiu, Wah

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Integrated analysis of isopentenyl pyrophosphate (IPP) toxicity in isoprenoid-producing Escherichia coli von George, Kevin W., Thompson, Mitchell G., Kim, Joonhoon, Baidoo, Edward E.K., Wang, George, Benites, Veronica Teixeira, Petzold, Christopher J., Chan, Leanne Jade G., Yilmaz, Suzan, Turhanen, Petri, Adams, Paul D., Keasling, Jay D., Lee, Taek Soon

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The Phenix software for automated determination of macromolecular structures von Adams, Paul D., Afonine, Pavel V., Bunkóczi, Gábor, Chen, Vincent B., Echols, Nathaniel, Headd, Jeffrey J., Hung, Li-Wei, Jain, Swati, Kapral, Gary J., Grosse Kunstleve, Ralf W., McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert D., Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C., Zwart, Peter H.

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Cryo‐EM map interpretation and protein model‐building using iterative map segmentation von Terwilliger, Thomas C., Adams, Paul D., Afonine, Pavel V., Sobolev, Oleg V.

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