How to engineer the unknown: Advancing a quantitative and predictive understanding of plant and soil biology to address climate change von Alamos, Simon, Shih, Patrick M

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The evolution and productivity of carbon fixation pathways in response to changes in oxygen concentration over geological time von Ward, Lewis M., Shih, Patrick M.

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Granick revisited: Synthesizing evolutionary and ecological evidence for the late origin of bacteriochlorophyll via ghost lineages and horizontal gene transfer von Ward, Lewis M, Shih, Patrick M

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Plant glycosyltransferases for expanding bioactive glycoside diversity von Sirirungruang, Sasilada, Barnum, Collin R, Tang, Sophia N, Shih, Patrick M

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Primary endosymbiosis events date to the later Proterozoic with cross-calibrated phylogenetic dating of duplicated ATPase proteins von Shih, Patrick M., Matzke, Nicholas J.

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Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer von Ward, Lewis M, Hemp, James, Shih, Patrick M, McGlynn, Shawn E, Fischer, Woodward W

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Discovery of photosynthesis genes through whole-genome sequencing of acetate-requiring mutants of Chlamydomonas reinhardtii von Wakao, Setsuko, Shih, Patrick M, Guan, Katharine, Schackwitz, Wendy, Ye, Joshua, Patel, Dhruv, Shih, Robert M, Dent, Rachel M, Chovatia, Mansi, Sharma, Aditi, Martin, Joel, Wei, Chia-Lin, Niyogi, Krishna K

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Cyanobacterial Evolution: Fresh Insight into Ancient Questions von Shih, Patrick M.

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Early Cyanobacteria and the Innovation of Microbial Sunscreens von Shih, Patrick M

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Phototrophy and carbon fixation in Chlorobi postdate the rise of oxygen von Ward, L. M, Shih, Patrick M

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MetaPOAP: presence or absence of metabolic pathways in metagenome-assembled genomes von Ward, Lewis M, Shih, Patrick M, Fischer, Woodward W

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Utilizing Plant Synthetic Biology to Improve Human Health and Wellness von Barnum, Collin R., Endelman, Benjamin J., Shih, Patrick M.

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Biochemical characterization of predicted Precambrian RuBisCO von Shih, Patrick M., Occhialini, Alessandro, Cameron, Jeffrey C., Andralojc, P John, Parry, Martin A. J., Kerfeld, Cheryl A.

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A robust gene-stacking method utilizing yeast assembly for plant synthetic biology von Shih, Patrick M., Vuu, Khanh, Mansoori, Nasim, Ayad, Leïla, Louie, Katherine B., Bowen, Benjamin P., Northen, Trent R., Loqué, Dominique

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Expression of a mammalian RNA demethylase increases flower number and floral stem branching in Arabidopsis thaliana von Markel, Kasey, Waldburger, Lucas, Shih, Patrick M.

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Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria von Matheus Carnevali, Paula B., Schulz, Frederik, Castelle, Cindy J., Kantor, Rose S., Shih, Patrick M., Sharon, Itai, Santini, Joanne M., Olm, Matthew R., Amano, Yuki, Thomas, Brian C., Anantharaman, Karthik, Burstein, David, Becraft, Eric D., Stepanauskas, Ramunas, Woyke, Tanja, Banfield, Jillian F.

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Engineering custom morpho- and chemotypes of Populus for sustainable production of biofuels, bioproducts, and biomaterials von Buell, C. Robin, Dardick, Christopher, Parrott, Wayne, Schmitz, Robert J., Shih, Patrick M., Tsai, Chung-Jui, Urbanowicz, Breeanna

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Harnessing Plant Sugar Metabolism for Glycoengineering von Tang, Sophia N, Barnum, Collin R, Szarzanowicz, Matthew J, Sirirungruang, Sasilada, Shih, Patrick M

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Bacterial diversification through geological time von Louca, Stilianos, Shih, Patrick M., Pennell, Matthew W., Fischer, Woodward W., Parfrey, Laura Wegener, Doebeli, Michael

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A Bacterial Form I' Rubisco Has a Smaller Carbon Isotope Fractionation than Its Form I Counterpart von Wang, Renée Z, Liu, Albert K, Banda, Douglas M, Fischer, Woodward W, Shih, Patrick M

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