Lactation Biology Symposium: maternal nutrition during early and mid-to-late pregnancy: Comparative effects on milk production of twin-born ewe progeny during their first lactation von Paten, A M, Kenyon, P R, Lopez-Villalobos, N, Peterson, S W, Jenkinson, C M C, Pain, S J, Blair, H T

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Identification of reference genes for RT-qPCR in ovine mammary tissue during late pregnancy and lactation and in response to maternal nutritional programming von Paten, A M, Pain, S J, Peterson, S W, Blair, H T, Kenyon, P R, Dearden, P K, Duncan, E J

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LACTATION BIOLOGY SYMPOSIUM: Maternal nutrition during early and mid-to-late pregnancy: Comparative effects on milk production of twin-born ewe progeny during their first lactation... von Paten, A. M., Kenyon, P. R., Lopez-Villalobos, N., Peterson, S. W., Jenkinson, C. M. C., Pain, S. J., Blair, H. T.

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Functional development of the adult ovine mammary gland-insights from gene expression profiling von Paten, AM, Duncan, EJ, Pain, SJ, Peterson, SW, Kenyon, PR, Blair, HT, Dearden, PK

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Identification of reference genes for RT-qPCR in ovine mammary tissue during late pregnancy and lactation and in response to maternal nutritional programming von Paten, AM, Pain, SJ, Peterson, SW, Blair, HT, Kenyon, PR, Dearden, PK, Duncan, EJ

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Genome graphs and the evolution of genome inference von Paten, Benedict, Novak, Adam M, Eizenga, Jordan M, Garrison, Erik

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Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community von Pinu, Farhana R, Beale, David J, Paten, Amy M, Kouremenos, Konstantinos, Swarup, Sanjay, Schirra, Horst J, Wishart, David

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Variation graph toolkit improves read mapping by representing genetic variation in the reference von Garrison, Erik, Sirén, Jouni, Novak, Adam M, Hickey, Glenn, Eizenga, Jordan M, Dawson, Eric T, Jones, William, Garg, Shilpa, Markello, Charles, Lin, Michael F, Paten, Benedict, Durbin, Richard

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Haplotype-aware graph indexes von Sirén, Jouni, Garrison, Erik, Novak, Adam M, Paten, Benedict, Durbin, Richard

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Progressive Cactus is a multiple-genome aligner for the thousand-genome era von Armstrong, Joel, Hickey, Glenn, Diekhans, Mark, Fiddes, Ian T., Novak, Adam M., Deran, Alden, Fang, Qi, Xie, Duo, Feng, Shaohong, Stiller, Josefin, Genereux, Diane, Johnson, Jeremy, Marinescu, Voichita Dana, Alföldi, Jessica, Harris, Robert S., Lindblad-Toh, Kerstin, Haussler, David, Karlsson, Elinor, Jarvis, Erich D., Zhang, Guojie, Paten, Benedict

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Production-scale fibronectin nanofibers promote wound closure and tissue repair in a dermal mouse model von Chantre, Christophe O., Campbell, Patrick H., Golecki, Holly M., Buganza, Adrian T., Capulli, Andrew K., Deravi, Leila F., Dauth, Stephanie, Sheehy, Sean P., Paten, Jeffrey A., Gledhill, Karl, Doucet, Yanne S., Abaci, Hasan E., Ahn, Seungkuk, Pope, Benjamin D., Ruberti, Jeffrey W., Hoerstrup, Simon P., Christiano, Angela M., Parker, Kevin Kit

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An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons von Jacobs, Frank M. J., Greenberg, David, Nguyen, Ngan, Haeussler, Maximilian, Ewing, Adam D., Katzman, Sol, Paten, Benedict, Salama, Sofie R., Haussler, David

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Pangenome Graphs von Eizenga, Jordan M, Novak, Adam M, Sibbesen, Jonas A, Heumos, Simon, Ghaffaari, Ali, Hickey, Glenn, Chang, Xian, Seaman, Josiah D, Rounthwaite, Robin, Ebler, Jana, Rautiainen, Mikko, Garg, Shilpa, Paten, Benedict, Marschall, Tobias, Sirén, Jouni, Garrison, Erik

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Long-term dynamics of honey bee colonies following exposure to chemical stress von Colin, Théotime, Meikle, William G., Paten, Amy M., Barron, Andrew B.

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A comparative genomics multitool for scientific discovery and conservation von Genereux, Diane P., Serres, Aitor, Armstrong, Joel, Johnson, Jeremy, Marinescu, Voichita D., Muren, Eva, Juan, David, Bejerano, Gill, Casewell, Nicholas R., Chemnick, Leona G., Damas, Joana, Di Palma, Federica, Diekhans, Mark, Fiddes, Ian T., Garber, Manuel, Gladyshev, Vadim N., Goodman, Linda, Haerty, Wilfried, Houck, Marlys L., Hubley, Robert, Kivioja, Teemu, Koepfli, Klaus-Peter, Kuderna, Lukas F. K., Lander, Eric S., Meadows, Jennifer R. S., Murphy, William J., Nash, Will, Noh, Hyun Ji, Nweeia, Martin, Pfenning, Andreas R., Pollard, Katherine S., Ray, David A., Shapiro, Beth, Smit, Arian F. A., Springer, Mark S., Steiner, Cynthia C., Swofford, Ross, Taipale, Jussi, Teeling, Emma C., Turner-Maier, Jason, Alfoldi, Jessica, Birren, Bruce, Ryder, Oliver A., Lewin, Harris A., Paten, Benedict, Marques-Bonet, Tomas, Lindblad-Toh, Kerstin, Karlsson, Elinor K.

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Mapping DNA methylation with high-throughput nanopore sequencing von Rand, Arthur C, Jain, Miten, Eizenga, Jordan M, Musselman-Brown, Audrey, Olsen, Hugh E, Akeson, Mark, Paten, Benedict

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The UCSC Genome Browser database: 2024 update von Raney, Brian J, Barber, Galt P, Benet-Pagès, Anna, Casper, Jonathan, Clawson, Hiram, Cline, Melissa S, Diekhans, Mark, Fischer, Clayton, Navarro Gonzalez, Jairo, Hickey, Glenn, Hinrichs, Angie S, Kuhn, Robert M, Lee, Brian T, Lee, Christopher M, Le Mercier, Phillipe, Miga, Karen H, Nassar, Luis R, Nejad, Parisa, Paten, Benedict, Perez, Gerardo, Schmelter, Daniel, Speir, Matthew L, Wick, Brittney D, Zweig, Ann S, Haussler, David, Kent, W James, Haeussler, Maximilian

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GENCODE 2021 von Frankish, Adam, Diekhans, Mark, Jungreis, Irwin, Lagarde, Julien, Loveland, Jane E, Mudge, Jonathan M, Sisu, Cristina, Wright, James C, Armstrong, Joel, Barnes, If, Berry, Andrew, Bignell, Alexandra, Boix, Carles, Carbonell Sala, Silvia, Cunningham, Fiona, Di Domenico, Tomás, Donaldson, Sarah, Fiddes, Ian T, García Girón, Carlos, Gonzalez, Jose Manuel, Grego, Tiago, Hardy, Matthew, Hourlier, Thibaut, Howe, Kevin L, Hunt, Toby, Izuogu, Osagie G, Johnson, Rory, Martin, Fergal J, Martínez, Laura, Mohanan, Shamika, Muir, Paul, Navarro, Fabio C P, Parker, Anne, Pei, Baikang, Pozo, Fernando, Riera, Ferriol Calvet, Ruffier, Magali, Schmitt, Bianca M, Stapleton, Eloise, Suner, Marie-Marthe, Sycheva, Irina, Uszczynska-Ratajczak, Barbara, Wolf, Maxim Y, Xu, Jinuri, Yang, Yucheng T, Yates, Andrew, Zerbino, Daniel, Zhang, Yan, Choudhary, Jyoti S, Gerstein, Mark, Guigó, Roderic, Hubbard, Tim J P, Kellis, Manolis, Paten, Benedict, Tress, Michael L, Flicek, Paul

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Gaps and complex structurally variant loci in phased genome assemblies von Porubsky, David, Vollger, Mitchell R, Harvey, William T, Rozanski, Allison N, Ebert, Peter, Hickey, Glenn, Hasenfeld, Patrick, Sanders, Ashley D, Stober, Catherine, Korbel, Jan O, Paten, Benedict, Marschall, Tobias, Eichler, Evan E

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Pangenomics enables genotyping of known structural variants in 5202 diverse genomes von Siren, Jouni, Monlong, Jean, Chang, Xian, Novak, Adam M., Eizenga, Jordan M., Markello, Charles, Sibbesen, Jonas A., Hickey, Glenn, Chang, Pi-Chuan, Carroll, Andrew, Gupta, Namrata, Gabriel, Stacey, Blackwell, Thomas W., Ratan, Aakrosh, Taylor, Kent D., Rich, Stephen S., Rotter, Jerome, Haussler, David, Garrison, Erik, Paten, Benedict

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