Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma von Robertson, A. Gordon, Gibb, Ewan A., Oba, Junna, Uzunangelov, Vladislav, Walter, Vonn, Danilova, Ludmila, Kimes, Patrick K., Babur, Ozgun, Akbani, Rehan, Bristow, Christopher A., Iype, Lisa, Beroukhim, Rameen, Bowen, Jay, Bowlby, Reanne, Bristow, Christopher A., Carlsen, Rebecca, Cebulla, Colleen M., Chin, Lynda, Chuah, Eric, Chudamani, Sudha, Cibulskis, Carrie, Cibulskis, Kristian, Cope, Leslie, Coupland, Sarah E., Defreitas, Timothy, Demchok, John A., Desjardins, Laurence, Esmaeli, Bita, Felau, Ina, Ferguson, Martin L., Frazer, Scott, Gehlenborg, Nils, Gerken, Mark, Getz, Gad, Gibb, Ewan A., Griewank, Klaus G., Heiman, David I., Helsel, Carmen, Hu, Xin, Jefferys, Stuart R., Leraas, Kristen M., Lichtenberg, Tara M., Liu, Jia, Iype, Lisa, Ma, Yussanne, Mariani, Odette, Marra, Marco A., Meier, Sam, Meyerson, Matthew, Mungall, Andrew J., Mungall, Karen L., Murray, Bradley A., Naresh, Rashi, Oba, Junna, Pantazi, Angeliki, Parfenov, Michael, Park, Peter J., Protopopov, Alexei, Radenbaugh, Amie, Rai, Karan, Ramirez, Nilsa C., Ren, Xiaojia, Reynolds, Sheila M., Roach, Jeffrey, Robertson, A. Gordon, Schadendorf, Dirk, Schumacher, Steven E., Seidman, Jonathan, Seth, Sahil, Sethi, Geetika, Sheth, Margi, Shi, Yan, Singh, Arun D., Sipahimalani, Payal, Soloway, Matthew G., Sun, Huandong, Tan, Donghui, Tang, Ming, Tse, Kane, Uzunangelov, Vladislav, Verhaak, Roel G.W., Walter, Vonn, Wan, Yunhu, Weinstein, John N., Williams, Michelle D., Woodman, Scott E., Yang, Liming, Yang, Lixing, Yau, Christina, Zhang, Hailei, Zmuda, Erik, Benz, Christopher, Mills, Gordon B., Verhaak, Roel G.W., Gershenwald, Jeffrey E., Schoenfield, Lynn, Abdel-Rahman, Mohamed H., Stern, Marc-Henri, Cebulla, Colleen M., Woodman, Scott E.

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An integrated genomics approach identifies drivers of proliferation in luminal-subtype human breast cancer von Gatza, Michael L, Silva, Grace O, Parker, Joel S, Fan, Cheng, Perou, Charles M

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Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer von Gendoo, Deena M A, Ratanasirigulchai, Natchar, Schröder, Markus S, Paré, Laia, Parker, Joel S, Prat, Aleix, Haibe-Kains, Benjamin

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Phenotypic and molecular characterization of the claudin-low intrinsic subtype of breast cancer von Prat, Aleix, Parker, Joel S, Karginova, Olga, Fan, Cheng, Livasy, Chad, Herschkowitz, Jason I, He, Xiaping, Perou, Charles M

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Intrinsic subtypes of high-grade bladder cancer reflect the hallmarks of breast cancer biology von Damrauer, Jeffrey S., Hoadley, Katherine A., Chism, David D., Fan, Cheng, Tiganelli, Christopher J., Wobker, Sara E., Yeh, Jen Jen, Milowsky, Matthew I., Iyer, Gopa, Parker, Joel S., Kim, William Y.

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Immune-Related Gene Expression Profiling After PD-1 Blockade in Non-Small Cell Lung Carcinoma, Head and Neck Squamous Cell Carcinoma, and Melanoma von Prat, Aleix, Navarro, Alejandro, Paré, Laia, Reguart, Noemí, Galván, Patricia, Pascual, Tomás, Martínez, Alex, Nuciforo, Paolo, Comerma, Laura, Alos, Llucia, Pardo, Nuria, Cedrés, Susana, Fan, Cheng, Parker, Joel S, Gaba, Lydia, Victoria, Iván, Viñolas, Nuria, Vivancos, Ana, Arance, Ana, Felip, Enriqueta

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Prognostic Significance of Progesterone Receptor–Positive Tumor Cells Within Immunohistochemically Defined Luminal A Breast Cancer von PRAT, Aleix, CHEANG, Maggie Chon U, PEROU, Charles M, MARTIN, Miguel, PARKER, Joel S, CARRASCO, Eva, CABALLERO, Rosalia, TYLDESLEY, Scott, GELMON, Karen, BERNARD, Philip S, NIELSEN, Torsten O

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Genomic analysis of oesophageal squamous-cell carcinoma identifies alcohol drinking-related mutation signature and genomic alterations von Chang, Jiang, Tan, Wenle, Ling, Zhiqiang, Xi, Ruibin, Shao, Mingming, Chen, Mengjie, Luo, Yingying, Zhao, Yanjie, Liu, Yun, Huang, Xiancong, Xia, Yuchao, Hu, Jinlin, Parker, Joel S., Marron, David, Cui, Qionghua, Peng, Linna, Chu, Jiahui, Li, Hongmin, Du, Zhongli, Han, Yaling, Tan, Wen, Liu, Zhihua, Zhan, Qimin, Li, Yun, Mao, Weimin, Wu, Chen, Lin, Dongxin

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Genetic determinants of cellular addiction to DNA polymerase theta von Feng, Wanjuan, Simpson, Dennis A., Carvajal-Garcia, Juan, Price, Brandon A., Kumar, Rashmi J., Mose, Lisle E., Wood, Richard D., Rashid, Naim, Purvis, Jeremy E., Parker, Joel S., Ramsden, Dale A., Gupta, Gaorav P.

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Radiation-related genomic profile of papillary thyroid carcinoma after the Chernobyl accident von Morton, Lindsay M., Karyadi, Danielle M., Stewart, Chip, Bogdanova, Tetiana, Dawson, Eric T., Steinberg, Mia K., Dai, Jieqiong, Hartley, Stephen W., Schonfeld, Sara J., Sampson, Joshua N., Maruvka, Yosef E., Kapoor, Vidushi, Ramsden, Dale A., Carvajal-Garcia, Juan, Perou, Charles M., Parker, Joel S., Krznaric, Marko, Yeager, Meredith, Boland, Joseph F., Hutchinson, Amy, Hicks, Belynda D., Dagnall, Casey L., Gastier-Foster, Julie M., Bowen, Jay, Lee, Olivia, Machiela, Mitchell J., Cahoon, Elizabeth K., Brenner, Alina, Mabuchi, Kiyohiko, Drozdovitch, Vladimir, Masiuk, Sergii, Chepurny, Mykola, Zurnadzhy, Liudmyla Yu, Hatch, Maureen, de Gonzalez, Amy Berrington, Thomas, Gerry A., Tronko, Mykola D., Getz, Gad, Chanock, Stephen J.

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Inhibition of Lapatinib-induced Kinome Reprogramming in ERBB2-positive Breast Cancer by Targeting BET Family Bromodomains von Stuhlmiller, Timothy J., Miller, Samantha M., Zawistowski, Jon S., Nakamura, Kazuhiro, Beltran, Adriana S., Duncan, James S., Angus, Steven P., Collins, Kyla A.L, Granger, Deborah A., Reuther, Rachel A., Graves, Lee M., Gomez, Shawn M., Kuan, Pei-Fen, Parker, Joel S., Chen, Xin, Sciaky, Noah, Carey, Lisa A., Earp, H. Shelton, Jin, Jian, Johnson, Gary L.

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Rapid idiosyncratic mechanisms of clinical resistance to KRAS G12C inhibition von Tsai, Yihsuan S, Woodcock, Mark G, Azam, Salma H, Thorne, Leigh B, Kanchi, Krishna L, Parker, Joel S, Vincent, Benjamin G, Pecot, Chad V

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Targeting brain lesions of non-small cell lung cancer by enhancing CCL2-mediated CAR-T cell migration von Li, Hongxia, Harrison, Emily B., Li, Huizhong, Hirabayashi, Koichi, Chen, Jing, Li, Qi-Xiang, Gunn, Jared, Weiss, Jared, Savoldo, Barbara, Parker, Joel S., Pecot, Chad V., Dotti, Gianpietro, Du, Hongwei

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An oncogenic Ezh2 mutation induces tumors through global redistribution of histone 3 lysine 27 trimethylation von Souroullas, George P, Jeck, William R, Parker, Joel S, Simon, Jeremy M, Liu, Jie-Yu, Paulk, Joshiawa, Xiong, Jessie, Clark, Kelly S, Fedoriw, Yuri, Qi, Jun, Burd, Christin E, Bradner, James E, Sharpless, Norman E

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Topoisomerases facilitate transcription of long genes linked to autism von King, Ian F., Yandava, Chandri N., Mabb, Angela M., Hsiao, Jack S., Huang, Hsien-Sung, Pearson, Brandon L., Calabrese, J. Mauro, Starmer, Joshua, Parker, Joel S., Magnuson, Terry, Chamberlain, Stormy J., Philpot, Benjamin D., Zylka, Mark J.

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Ezh2 Orchestrates Gene Expression for the Stepwise Differentiation of Tissue-Specific Stem Cells von Ezhkova, Elena, Pasolli, H. Amalia, Parker, Joel S., Stokes, Nicole, Su, I-hsin, Hannon, Gregory, Tarakhovsky, Alexander, Fuchs, Elaine

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Development and verification of the PAM50-based Prosigna breast cancer gene signature assay von Wallden, Brett, Storhoff, James, Nielsen, Torsten, Dowidar, Naeem, Schaper, Carl, Ferree, Sean, Liu, Shuzhen, Leung, Samuel, Geiss, Gary, Snider, Jacqueline, Vickery, Tammi, Davies, Sherri R, Mardis, Elaine R, Gnant, Michael, Sestak, Ivana, Ellis, Matthew J, Perou, Charles M, Bernard, Philip S, Parker, Joel S

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ABRA: improved coding indel detection via assembly-based realignment von Mose, Lisle E, Wilkerson, Matthew D, Hayes, D Neil, Perou, Charles M, Parker, Joel S

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Characterization of cell lines derived from breast cancers and normal mammary tissues for the study of the intrinsic molecular subtypes von Prat, Aleix, Karginova, Olga, Parker, Joel S., Fan, Cheng, He, Xiaping, Bixby, Lisa, Harrell, J. Chuck, Roman, Erick, Adamo, Barbara, Troester, Melissa, Perou, Charles M.

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Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes von PARKER, Joel S, MULLINS, Michael, QUACKENBUSH, John F, STIJLEMAN, Inge J, PALAZZO, Juan, MARRON, J. S, NOBEL, Andrew B, MARDIS, Elaine, NIELSEN, Torsten O, ELLIS, Matthew J, PEROU, Charles M, BERNARD, Philip S, CHEANG, Maggie C. U, LEUNG, Samuel, VODUC, David, VICKERY, Tammi, DAVIES, Sherri, FAURON, Christiane, XIAPING HE, ZHIYUAN HU

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