The specious art of single-cell genomics von Chari, Tara, Pachter, Lior

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Hypertrophy and/or Hyperplasia: Dynamics of Adipose Tissue Growth von Jo, Junghyo, Gavrilova, Oksana, Pack, Stephanie, Jou, William, Mullen, Shawn, Sumner, Anne E, Cushman, Samuel W, Periwal, Vipul

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Quantifying critical states of complex diseases using single-sample dynamic network biomarkers von Liu, Xiaoping, Chang, Xiao, Liu, Rui, Yu, Xiangtian, Chen, Luonan, Aihara, Kazuyuki

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Using the concordance of in vitro and in vivo data to evaluate extrapolation assumptions von Honda, Gregory S, Pearce, Robert G, Pham, Ly L, Setzer, R W, Wetmore, Barbara A, Sipes, Nisha S, Gilbert, Jon, Franz, Briana, Thomas, Russell S, Wambaugh, John F

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Perspective: Dimensions of the scientific method von Voit, Eberhard O

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Environments that induce synthetic microbial ecosystems von Klitgord, Niels, Segrè, Daniel

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There are no equal opportunity infectors: Epidemiological modelers must rethink our approach to inequality in infection risk von Zelner, Jon, Masters, Nina B, Naraharisetti, Ramya, Mojola, Sanyu A, Chowkwanyun, Merlin, Malosh, Ryan

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Predicting antimicrobial resistance using conserved genes von Nguyen, Marcus, Olson, Robert, Shukla, Maulik, VanOeffelen, Margo, Davis, James J

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MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra von Liu, Youzhong, Mrzic, Aida, Meysman, Pieter, De Vijlder, Thomas, Romijn, Edwin P, Valkenborg, Dirk, Bittremieux, Wout, Laukens, Kris

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CyVerse: Cyberinfrastructure for open science von Swetnam, Tyson L, Antin, Parker B, Bartelme, Ryan, Bucksch, Alexander, Camhy, David, Chism, Greg, Choi, Illyoung, Cooksey, Amanda M, Cosi, Michele, Cowen, Cindy, Culshaw-Maurer, Michael, Davey, Robert, Davey, Sean, Devisetty, Upendra, Edgin, Tony, Edmonds, Andy, Fedorov, Dmitry, Frady, Jeremy, Fonner, John, Gillan, Jeffrey K, Hossain, Iqbal, Joyce, Blake, Lang, Konrad, Lee, Tina, Littin, Shelley, McEwen, Ian, Merchant, Nirav, Micklos, David, Nelson, Andrew, Ramsey, Ashley, Roberts, Sarah, Sarando, Paul, Skidmore, Edwin, Song, Jawon, Sprinkle, Mary Margaret, Srinivasan, Sriram, Stanzione, Dan, Strootman, Jonathan D, Stryeck, Sarah, Tuteja, Reetu, Vaughn, Matthew, Wali, Mojib, Wall, Mariah, Walls, Ramona, Wang, Liya, Wickizer, Todd, Williams, Jason, Wregglesworth, John, Lyons, Eric

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Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production von Colijn, Caroline, Brandes, Aaron, Zucker, Jeremy, Lun, Desmond S, Weiner, Brian, Farhat, Maha R, Cheng, Tan-Yun, Moody, D Branch, Murray, Megan, Galagan, James E

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Simulation of 69 microbial communities indicates sequencing depth and false positives are major drivers of bias in prokaryotic metagenome-assembled genome recovery von Rocha, Ulisses, Kasmanas, Jonas Coelho, Toscan, Rodolfo, Sanches, Danilo S, Magnusdottir, Stefania, Saraiva, Joao Pedro

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The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense von Lause, Jan, Berens, Philipp, Kobak, Dmitry

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Zero-shot denoising of microscopy images recorded at high-resolution limits von Salwig, Sebastian, Drefs, Jakob, Lücke, Jörg

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Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effect von Shlomi, Tomer, Benyamini, Tomer, Gottlieb, Eyal, Sharan, Roded, Ruppin, Eytan

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FAIR-USE4OS: Guidelines for creating impactful open-source software von Sonabend, Raphael, Gruson, Hugo, Wolansky, Leo, Kiragga, Agnes, Katz, Daniel S

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Benchmarking multi-ancestry prostate cancer polygenic risk scores in a real-world cohort von Shah, Yajas, Kulm, Scott, Nauseef, Jones T, Chen, Zhengming, Elemento, Olivier, Kensler, Kevin H, Sharaf, Ravi N

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For long-term sustainable software in bioinformatics von Coelho, Luis Pedro

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From policy to practice: Lessons learned from an open science funding initiative von Dumanis, Sonya B, Ratan, Kristen, McIntosh, Souad, Shah, Hetal V, Lewis, Matt, Vines, Timothy H, Schekman, Randy, Riley, Ekemini A

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Quantifying the contribution of the liver to glucose homeostasis: a detailed kinetic model of human hepatic glucose metabolism von König, Matthias, Bulik, Sascha, Holzhütter, Hermann-Georg

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