Reconstruction of cellular signalling networks and analysis of their properties von Palsson, Bernhard O, Subramaniam, Shankar, Papin, Jason A, Hunter, Tony

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Mechanistic identification of biofluid metabolite changes as markers of acetaminophen-induced liver toxicity in rats von Pannala, Venkat R., Vinnakota, Kalyan C., Rawls, Kristopher D., Estes, Shanea K., O'Brien, Tracy P., Printz, Richard L., Papin, Jason A., Reifman, Jaques, Shiota, Masakazu, Young, Jamey D., Wallqvist, Anders

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Comparison of network-based pathway analysis methods von Papin, Jason A., Stelling, Joerg, Price, Nathan D., Klamt, Steffen, Schuster, Stefan, Palsson, Bernhard O.

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Genome-scale microbial in silico models: the constraints-based approach von Price, Nathan D, Papin, Jason A, Schilling, Christophe H, Palsson, Bernhard O

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Metabolic pathways in the post-genome era von Papin, Jason A., Price, Nathan D., Wiback, Sharon J., Fell, David A., Palsson, Bernhard O.

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Hierarchical thinking in network biology: the unbiased modularization of biochemical networks von Papin, Jason A., Reed, Jennifer L., Palsson, Bernhard O.

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The JAK-STAT Signaling Network in the Human B-Cell: An Extreme Signaling Pathway Analysis von Papin, Jason A., Palsson, Bernhard O.

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Characterizing emergent properties of immunological systems with multi-cellular rule-based computational modeling von Chavali, Arvind K, Gianchandani, Erwin P, Tung, Kenneth S, Lawrence, Michael B, Peirce, Shayn M, Papin, Jason A

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Topological analysis of mass-balanced signaling networks: a framework to obtain network properties including crosstalk von Papin, Jason A, Palsson, Bernhard O

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Systems-level metabolism of the Altered Schaedler Flora, a complete gut microbiota von Biggs, MB, Medlock, GL, Moutinho, TJ, Lees, HJ, Swann, JR, Kolling, GL, Papin, JA

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Extreme pathway lengths and reaction participation in genome-scale metabolic networks von Papin, Jason A, Price, Nathan D, Palsson, Bernhard Ø

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Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis von Price, Nathan D, Papin, Jason A, Palsson, Bernhard Ø

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The Genome-Scale Metabolic Extreme Pathway Structure in Haemophilus influenzae Shows Significant Network Redundancy von PAPIN, JASON A., PRICE, NATHAN D., EDWARDS, JEREMY S., PALSSON, BERNHARD Ø.

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Development of network-based pathway definitions: the need to analyze real metabolic networks von Palsson, Bernhard O., Price, Nathan D., Papin, Jason A.

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Analysis of Metabolic Capabilities Using Singular Value Decomposition of Extreme Pathway Matrices von Price, Nathan D., Reed, Jennifer L., Papin, Jason A., Famili, Iman, Palsson, Bernhard O.

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Network-based analysis of metabolic regulation in the human red blood cell von Price, Nathan D., Reed, Jennifer L., Papin, Jason A., Wiback, Sharon J., Palsson, Bernhard O.

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Harnessing Systems Biology Approaches to Engineer Functional Microvascular Networks von Sefcik, Lauren S., Wilson, Jennifer L., Papin, Jason A., Botchwey, Edward A.

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Protein- and zinc-deficient diets modulate the murine microbiome and metabolic phenotype von Mayneris-Perxachs, J, Bolick, DT, Leng, J, Medlock, GL, Kolling, GL, Papin, JA, Swann, JR, Guerrant, RL

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Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing von Lieven, C, Beber, ME, Olivier, BG, Bergmann, FT, Ataman, M, Babaei, P, Bartell, JA, Blank, LM, Chauhan, S, Correia, K, Diener, C, Dräger, A, Ebert, BE, Edirisinghe, JN, Faria, JP, Feist, AM, Fengos, G, Fleming, RMT, García-Jiménez, B, Hatzimanikatis, V, van Helvoirt, W, Henry, CS, Hermjakob, H, Herrgård, MJ, Kaafarani, A, Kim, HU, King, Z, Klamt, S, Klipp, E, Koehorst, JJ, König, M, Lakshmanan, M, Lee, D-Y, Lee, SY, Lee, S, Lewis, NE, Liu, F, Ma, H, Machado, D, Mahadevan, R, Maia, P, Mardinoglu, A, Medlock, GL, Monk, JM, Nielsen, J, Nielsen, LK, Nogales, J, Nookaew, I, Palsson, BO, Papin, JA, Patil, KR, Poolman, M, Price, ND, Resendis-Antonio, O, Richelle, A, Rocha, I, Sánchez, BJ, Schaap, PJ, Sheriff, RSM, Shoaie, S, Sonnenschein, N, Teusink, B, Vilaça, P, Vik, JO, Wodke, JAH, Xavier, JC, Yuan, Q, Zakhartsev, M, Zhang, C

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MEMOTE for standardized genome-scale metabolic model testing von Lieven, C, Beber, ME, Olivier, BG, Bergmann, FT, Ataman, M, Babaei, P, Bartell, JA, Blank, LM, Chauhan, S, Correia, K, Diener, C, Dräger, A, Ebert, BE, Edirisinghe, JN, Faria, JP, Feist, AM, Fengos, G, Fleming, RMT, García-Jiménez, B, Hatzimanikatis, V, van Helvoirt, W, Henry, CS, Hermjakob, H, Herrgård, MJ, Kaafarani, A, Kim, HU, King, Z, Klamt, S, Klipp, E, Koehorst, JJ, König, M, Lakshmanan, M, Lee, D-Y, Lee, SY, Lee, S, Lewis, NE, Liu, F, Ma, H, Machado, D, Mahadevan, R, Maia, P, Mardinoglu, A, Medlock, GL, Monk, JM, Nielsen, J, Nielsen, LK, Nogales, J, Nookaew, I, Palsson, BO, Papin, JA, Patil, KR, Poolman, M, Price, ND, Resendis-Antonio, O, Richelle, A, Rocha, I, Sánchez, BJ, Schaap, PJ, Malik Sheriff, RS, Shoaie, S, Sonnenschein, N, Teusink, B, Vilaça, P, Vik, JO, Wodke, JAH, Xavier, JC, Yuan, Q, Zakhartsev, M, Zhang, C

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