DISEASES: Text mining and data integration of disease–gene associations von Pletscher-Frankild, Sune, Pallejà, Albert, Tsafou, Kalliopi, Binder, Janos X., Jensen, Lars Juhl

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Metabolic and gut microbiome changes following GLP-1 or dual GLP-1/GLP-2 receptor agonist treatment in diet-induced obese mice von Madsen, Mette Simone Aae, Holm, Jacob Bak, Pallejà, Albert, Wismann, Pernille, Fabricius, Katrine, Rigbolt, Kristoffer, Mikkelsen, Martin, Sommer, Morten, Jelsing, Jacob, Nielsen, Henrik Bjørn, Vrang, Niels, Hansen, Henrik H.

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Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer von Wirbel, Jakob, Pyl, Paul Theodor, Kartal, Ece, Zych, Konrad, Kashani, Alireza, Milanese, Alessio, Fleck, Jonas S., Voigt, Anita Y., Palleja, Albert, Ponnudurai, Ruby, Sunagawa, Shinichi, Coelho, Luis Pedro, Schrotz-King, Petra, Vogtmann, Emily, Habermann, Nina, Niméus, Emma, Thomas, Andrew M., Manghi, Paolo, Gandini, Sara, Serrano, Davide, Mizutani, Sayaka, Shiroma, Hirotsugu, Shiba, Satoshi, Shibata, Tatsuhiro, Yachida, Shinichi, Yamada, Takuji, Waldron, Levi, Naccarati, Alessio, Segata, Nicola, Sinha, Rashmi, Ulrich, Cornelia M., Brenner, Hermann, Arumugam, Manimozhiyan, Bork, Peer, Zeller, Georg

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An Extensively Hydrolyzed Formula Supplemented with Two Human Milk Oligosaccharides Modifies the Fecal Microbiome and Metabolome in Infants with Cow's Milk Protein Allergy von Boulangé, Claire L, Pedersen, Helle K, Martin, Francois-Pierre, Siegwald, Léa, Pallejà Caro, Albert, Eklund, Aron C, Jia, Wei, Zhang, Huizhen, Berger, Bernard, Sprenger, Norbert, Heine, Ralf G, Cinnamon Study Investigator Group

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Protein-driven inference of miRNA-disease associations von Mørk, Søren, Pletscher-Frankild, Sune, Palleja Caro, Albert, Gorodkin, Jan, Jensen, Lars Juhl

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Skin dysbiosis in the microbiome in atopic dermatitis is site-specific and involves bacteria, fungus and virus von Bjerre, Rie Dybboe, Holm, Jacob Bak, Palleja, Albert, Solberg, Julie, Skov, Lone, Johansen, Jeanne Duus

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Recovery of gut microbiota of healthy adults following antibiotic exposure von Palleja, Albert, Mikkelsen, Kristian H., Forslund, Sofia K., Kashani, Alireza, Allin, Kristine H., Nielsen, Trine, Hansen, Tue H., Liang, Suisha, Feng, Qiang, Zhang, Chenchen, Pyl, Paul Theodor, Coelho, Luis Pedro, Yang, Huanming, Wang, Jian, Typas, Athanasios, Nielsen, Morten F., Nielsen, Henrik Bjorn, Bork, Peer, Wang, Jun, Vilsbøll, Tina, Hansen, Torben, Knop, Filip K., Arumugam, Manimozhiyan, Pedersen, Oluf

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Vaginal microbiome following orally administered probiotic von Hertz, Frederik Boetius, Holm, Jacob Bak, Pallejá, Albert, Björnsdóttir, María Kristín, Mikkelsen, Lasse Sommer, Brandsborg, Erik, Frimodt‐Møller, Niels

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Roux-en-Y gastric bypass surgery of morbidly obese patients induces swift and persistent changes of the individual gut microbiota von Palleja, Albert, Kashani, Alireza, Allin, Kristine H, Nielsen, Trine, Zhang, Chenchen, Li, Yin, Brach, Thorsten, Liang, Suisha, Feng, Qiang, Jørgensen, Nils Bruun, Bojsen-Møller, Kirstine N, Dirksen, Carsten, Burgdorf, Kristoffer S, Holst, Jens J, Madsbad, Sten, Wang, Jun, Pedersen, Oluf, Hansen, Torben, Arumugam, Manimozhiyan

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Microbiome Compositions and Resistome Levels after Antibiotic Treatment of Critically Ill Patients: An Observational Cohort Study von Nielsen, Karen Leth, Olsen, Markus Harboe, Pallejá, Albert, Ebdrup, Søren Røddik, Sørensen, Nikolaj, Lukjancenko, Oksana, Marvig, Rasmus L, Møller, Kirsten, Frimodt-Møller, Niels, Hertz, Frederik Boëtius

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Identification of Novel Type 1 Diabetes Candidate Genes by Integrating Genome-Wide Association Data, Protein-Protein Interactions, and Human Pancreatic Islet Gene Expression von BERGHOLDT, Regine, BRORSSON, Caroline, PALLEJA, Albert, BERCHTOLD, Lukas A, FLØYEL, Tina, BANG-BERTHELSEN, Claus Heiner, STENSGAARD FREDERIKSEN, Klaus, JUHL JENSEN, Lars, STØRLING, Joachim, POCIOT, Flemming

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DistiLD Database: diseases and traits in linkage disequilibrium blocks von Pallejà, Albert, Horn, Heiko, Eliasson, Sabrina, Jensen, Lars Juhl

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Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions? von Pallejà, Albert, Harrington, Eoghan D, Bork, Peer

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The Influence of FUT2 and FUT3 Polymorphisms and Nasopharyngeal Microbiome on Respiratory Infections in Breastfed Bangladeshi Infants from the Microbiota and Health Study von Binia, Aristea, Siegwald, Léa, Sultana, Shamima, Shevlyakova, Maya, Lefebvre, Gregory, Foata, Francis, Combremont, Séverine, Charpagne, Aline, Vidal, Karine, Sprenger, Norbert, Rahman, Mahbubar, Palleja, Albert, Eklund, Aron C, Nielsen, Henrik Bjørn, Brüssow, Harald, Sarker, Shafiqul Alam, Sakwinska, Olga

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Adaptation of the short intergenic spacers between co-directional genes to the Shine-Dalgarno motif among prokaryote genomes von Pallejà, Albert, García-Vallvé, Santiago, Romeu, Antoni

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HOODS: finding context-specific neighborhoods of proteins, chemicals and diseases von Palleja, Albert, Jensen, Lars J

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PairWise Neighbours database: overlaps and spacers among prokaryote genomes von Pallejà, Albert, Reverter, Tomàs, Garcia-Vallvé, Santiago, Romeu, Antoni

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50812 Infant Skin Microbiome is Associated with Decreased Risk of Atopic Dermatitis and Affected by Early Use of an Emollient von Insel, Richard A., O’B. Hourihane, Jonathan, Palleja, Albert, Moll, Janne Marie, Sørensen, Nikolaj, Irvine, Alan D., Stamatas, Georgios

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In Silico Prediction of the Origin of Replication among Bacteria: A Case Study of Bacteroides thetaiotaomicron von Pallejà, Albert, Guzman, Eduard, Garcia-Vallvé, Santiago, Romeu, Antoni

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Computational insights into intergenic regions and overlapping genes among prokaryote genomes von Pallejà Caro, Albert

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