Identification of FadAB Complexes Involved in Fatty Acid β-Oxidation in Streptomyces coelicolor and Construction of a Triacylglycerol Overproducing strain von Menendez-Bravo, Simón, Paganini, Julián, Avignone-Rossa, Claudio, Gramajo, Hugo, Arabolaza, Ana

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Source attribution of Listeria monocytogenes in the Netherlands von Mughini-Gras, Lapo, Paganini, Julian A., Guo, Ruoshui, Coipan, Claudia E., Friesema, Ingrid H.M., van Hoek, Angela H.A.M., van den Beld, Maaike, Kuiling, Sjoerd, Bergval, Indra, Wullings, Bart, van der Voort, Menno, Franz, Eelco, Dallman, Timothy J.

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Recovering Escherichia coli Plasmids in the Absence of Long-Read Sequencing Data von Paganini, Julian A, Plantinga, Nienke L, Arredondo-Alonso, Sergio, Willems, Rob J L, Schürch, Anita C

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PlasmidEC and gplas2: an optimized short-read approach to predict and reconstruct antibiotic resistance plasmids in Escherichia coli von Paganini, Julian A, Kerkvliet, Jesse J, Vader, Lisa, Plantinga, Nienke L, Meneses, Rodrigo, Corander, Jukka, Willems, Rob J L, Arredondo-Alonso, Sergio, Schürch, Anita C

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Characterization of blaKPC-2 and blaNDM-1 Plasmids of a K. pneumoniae ST11 Outbreak Clone von Boralli, Camila Maria dos Santos, Paganini, Julian Andres, Meneses, Rodrigo Silva, Mata, Camila Pacheco Silveira Martins da, Leite, Edna Marilea Meireles, Schürch, Anita C., Paganelli, Fernanda L., Willems, Rob J. L., Camargo, Ilana Lopes Baratella Cunha

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Reconstructing AMR plasmids: New methods to track the dissemination of mobile genetic elements in ICUs von Paganini, Julian Andrés

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Household acquisition and transmission of extended-spectrum β-lactamase (ESBL) -producing Enterobacteriaceae after hospital discharge of ESBL-positive index patients von Riccio, Maria E., Verschuuren, Tess, Conzelmann, Nadine, Martak, Daniel, Meunier, Alexandre, Salamanca, Elena, Delgado, Mercedes, Guther, Julia, Peter, Silke, Paganini, Julian, Martischang, Romain, Sauser, Julien, de Kraker, Marlieke E.A., Cherkaoui, Abdessalam, Fluit, Ad C., Cooper, Ben S., Hocquet, Didier, Kluytmans, Jan A.J.W., Tacconelli, Evelina, Rodriguez-Baño, Jesús, Harbarth, Stephan, Brossier, Caroline, von Dach, Elodie, Renzi, Gesuele, Schrenzel, Jacques, Bunk, Stefanie, Goepel, Siri, Hölzl, Florian, Eib, Michael, Autenrieth, Ingo B., Pascual, Álvaro, Bertrand, Xavier, Scharringa, Jelle, Musicha, Patrick

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PlasmidEC and gplas2: an optimized short-read approach to predict and reconstruct antibiotic resistance plasmids in Escherichia coli von Paganini, Julian A, Kerkvliet, Jesse J, Vader, Lisa, Plantinga, Nienke L, Meneses, Rodrigo, Corander, Jukka, Willems, Rob J L, Arredondo-Alonso, Sergio, Schürch, Anita C

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Dissemination of IncQ1 Plasmids Harboring NTEKPC-IId in a Brazilian Hospital von Boralli, Camila Maria dos Santos, Paganini, Julian Andres, Meneses, Rodrigo Silva, Mata, Camila Pacheco Silveira Martins da, Leite, Edna Marilea Meireles, Schürch, Anita C., Paganelli, Fernanda L., Willems, Rob J. L., Camargo, Ilana L. B. C.

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Recovering escherichia coli plasmids in the absence of long-read sequencing data von Paganini, Julian A, Plantinga, Nienke L, Arredondo-alonso, Sergio, Willems, Rob J.L, Schürch, Anita C

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Characterization of bla KPC-2 and bla NDM-1 Plasmids of a K. pneumoniae ST11 Outbreak Clone von Boralli, Camila Maria Dos Santos, Paganini, Julian Andres, Meneses, Rodrigo Silva, Mata, Camila Pacheco Silveira Martins da, Leite, Edna Marilea Meireles, Schürch, Anita C, Paganelli, Fernanda L, Willems, Rob J L, Camargo, Ilana Lopes Baratella Cunha

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Characterization of blaKPC-2 and blaNDM-1 Plasmids of a K. pneumoniae ST11 Outbreak Clone von Boralli, Camila Maria dos Santos, Paganini, Julian Andres, Meneses, Rodrigo Silva, Mata, Camila Pacheco Silveira Martins da, Leite, Edna Marilea Meireles, Schürch, Anita C, Paganelli, Fernanda L, Willems, Rob J.L, Camargo, Ilana Lopes Baratella Cunha

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Characterization of Ibla/I[sub.KPC-2] and Ibla/I[sub.NDM-1] Plasmids of a IK. pneumoniae/I ST11 Outbreak Clone von Boralli, Camila Maria dos Santos, Paganini, Julian Andres, Meneses, Rodrigo Silva, Mata, Camila Pacheco Silveira Ma, Leite, Edna Marilea Meireles, Schürch, Anita C, Paganelli, Fernanda L, Willems, Rob J. L, Camargo, Ilana Lopes Baratella Cunha

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Pangenome_benchmark von Paganini, Julian

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Acquisition of plasmids conferring carbapenem and aminoglycoside resistance and loss of surface-exposed macromolecule structures as strategies for the adaptation of Acinetobacter b... von Cameranesi, María M, Paganini, Julian, Limansky, Adriana S, Moran-Barrio, Jorgelina, Salcedo, Suzana P, Viale, Alejandro M, Repizo, Guillermo D

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Acquisition of plasmids conferring carbapenem and aminoglycoside resistance and loss of surface-exposed macromolecule structures as strategies for the adaptation of Acinetobacter b... von Cameranesi, María M., Paganini, Julian, Limansky, Adriana S., Moran-Barrio, Jorgelina, Salcedo, Suzana P., Viale, Alejandro M., Repizo, Guillermo D.

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ggcaller_panaroo_ppanggolin_stx von Paganini, Julian, Peilin, Liu

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Pangenome_benchmark_cuttlefish_length von Peilin, Liu, Paganini, Julian

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Pangenome_graph von Paganini, Julian, Peilin, Liu

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Enterococcus faecalis - Centrifuge Plasmid Database von Paganini, Julian, Kerkvliet, Jesse

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