VISTA : visualizing global DNA sequence alignments of arbitrary length von Mayor, Chris, Brudno, Michael, Schwartz, Jody R., Poliakov, Alexander, Rubin, Edward M., Frazer, Kelly A., Pachter, Lior S., Dubchak, Inna

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A multimodal cell census and atlas of the mammalian primary motor cortex von Callaway, Edward M., Dong, Hong-Wei, Ecker, Joseph R., Hawrylycz, Michael J., Huang, Z. Josh, Lein, Ed S., Ngai, John, Osten, Pavel, Ren, Bing, Tolias, Andreas Savas, White, Owen, Zeng, Hongkui, Zhuang, Xiaowei, Ascoli, Giorgio A., Behrens, M. Margarita, Chun, Jerold, Feng, Guoping, Gee, James C., Ghosh, Satrajit S., Halchenko, Yaroslav O., Hertzano, Ronna, Lim, Byung Kook, Martone, Maryann E., Ng, Lydia, Pachter, Lior, Ropelewski, Alexander J., Tickle, Timothy L., Yang, X. William, Zhang, Kun, Bakken, Trygve E., Berens, Philipp, Daigle, Tanya L., Harris, Julie A., Jorstad, Nikolas L., Kalmbach, Brian E., Kobak, Dmitry, Li, Yang Eric, Liu, Hanqing, Matho, Katherine S., Mukamel, Eran A., Naeemi, Maitham, Scala, Federico, Tan, Pengcheng, Ting, Jonathan T., Xie, Fangming, Zhang, Meng, Zhang, Zhuzhu, Zhou, Jingtian, Zingg, Brian, Armand, Ethan, Yao, Zizhen, Bertagnolli, Darren, Casper, Tamara, Crichton, Kirsten, Dee, Nick, Diep, Dinh, Ding, Song-Lin, Dong, Weixiu, Dougherty, Elizabeth L., Fong, Olivia, Goldman, Melissa, Goldy, Jeff, Hodge, Rebecca D., Hu, Lijuan, Keene, C. Dirk, Krienen, Fenna M., Kroll, Matthew, Lake, Blue B., Lathia, Kanan, Linnarsson, Sten, Liu, Christine S., Macosko, Evan Z., McCarroll, Steven A., McMillen, Delissa, Nadaf, Naeem M., Nguyen, Thuc Nghi, Palmer, Carter R., Pham, Thanh, Plongthongkum, Nongluk, Reed, Nora M., Regev, Aviv, Rimorin, Christine, Romanow, William J., Savoia, Steven, Siletti, Kimberly, Smith, Kimberly, Sulc, Josef, Tasic, Bosiljka, Tieu, Michael, Torkelson, Amy, Tung, Herman, van Velthoven, Cindy T. J., Vanderburg, Charles R., Yanny, Anna Marie, Fang, Rongxin, Hou, Xiaomeng, Lucero, Jacinta D., Osteen, Julia K., Pinto-Duarte, Antonio, Poirion, Olivier

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Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas von Brat, Daniel J, Verhaak, Roel G W, Aldape, Kenneth D, Yung, W K Alfred, Salama, Sofie R, Cooper, Lee A D, Rheinbay, Esther, Miller, C Ryan, Vitucci, Mark, Morozova, Olena, Robertson, A Gordon, Noushmehr, Houtan, Laird, Peter W, Cherniack, Andrew D, Akbani, Rehan, Huse, Jason T, Ciriello, Giovanni, Poisson, Laila M, Barnholtz-Sloan, Jill S, Berger, Mitchel S, Brennan, Cameron, Colen, Rivka R, Colman, Howard, Flanders, Adam E, Giannini, Caterina, Grifford, Mia, Iavarone, Antonio, Jain, Rajan, Joseph, Isaac, Kim, Jaegil, Kasaian, Katayoon, Mikkelsen, Tom, Murray, Bradley A, O'Neill, Brian Patrick, Pachter, Lior, Parsons, Donald W, Sougnez, Carrie, Sulman, Erik P, Vandenberg, Scott R, Van Meir, Erwin G, von Deimling, Andreas, Zhang, Hailei, Crain, Daniel, Lau, Kevin, Mallery, David, Morris, Scott, Paulauskis, Joseph, Penny, Robert, Shelton, Troy, Sherman, Mark, Yena, Peggy, Black, Aaron, Bowen, Jay, Dicostanzo, Katie, Gastier-Foster, Julie, Leraas, Kristen M, Lichtenberg, Tara M, Pierson, Christopher R, Ramirez, Nilsa C, Taylor, Cynthia, Weaver, Stephanie, Wise, Lisa, Zmuda, Erik, Davidsen, Tanja, Demchok, John A, Eley, Greg, Ferguson, Martin L, Hutter, Carolyn M, Mills Shaw, Kenna R, Ozenberger, Bradley A, Sheth, Margi, Sofia, Heidi J, Tarnuzzer, Roy, Wang, Zhining, Yang, Liming, Zenklusen, Jean Claude, Ayala, Brenda, Baboud, Julien, Chudamani, Sudha, Jensen, Mark A, Liu, Jia, Pihl, Todd, Raman, Rohini, Wan, Yunhu, Wu, Ye, Ally, Adrian, Auman, J Todd, Balasundaram, Miruna, Balu, Saianand, Baylin, Stephen B, Beroukhim, Rameen, Bootwalla, Moiz S, Bowlby, Reanne, Bristow, Christopher A, Brooks, Denise, Butterfield, Yaron, Carlsen, Rebecca, Carter, Scott, Chin, Lynda, Chu, Andy

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Comparative Survey-Based Study of Noninvasive Saliva Collection Devices von Kil, Yeokyoung (Anne), Booeshaghi, Ali S., Pachter, Lior S.

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Deciphering the impact of genomic variation on function von Engreitz, Jesse M., Lawson, Heather A., Singh, Harinder, Starita, Lea M., Hon, Gary C., Carter, Hannah, Sahni, Nidhi, Reddy, Timothy E., Lin, Xihong, Li, Yun, Munshi, Nikhil V., Chahrour, Maria H., Boyle, Alan P., Hitz, Benjamin C., Mortazavi, Ali, Craven, Mark, Mohlke, Karen L., Pinello, Luca, Wang, Ting, Kundaje, Anshul, Yue, Feng, Cody, Sarah, Farrell, Nina P., Love, Michael I., Muffley, Lara A., Pazin, Michael J., Reese, Fairlie, Van Buren, Eric, Dey, Kushal K., Kircher, Martin, Ma, Jian, Radivojac, Predrag, Balliu, Brunilda, Williams, Brian A., Huangfu, Danwei, Park, Chong Y., Quertermous, Thomas, Das, Jishnu, Calderwood, Michael A., Fowler, Douglas M., Vidal, Marc, Ferreira, Lucas, Mooney, Sean D., Pejaver, Vikas, Zhao, Jingjing, Gazal, Steven, Koch, Evan, Reilly, Steven K., Sunyaev, Shamil, Carpenter, Anne E., Buenrostro, Jason D., Leslie, Christina S., Savage, Rachel E., Giric, Stefanija, Luo, Chongyuan, Plath, Kathrin, Barrera, Alejandro, Schubach, Max, Gschwind, Andreas R., Moore, Jill E., Ahituv, Nadav, Yi, S. Stephen, Hallgrimsdottir, Ingileif, Gaulton, Kyle J., Sakaue, Saori, Booeshaghi, Sina, Mattei, Eugenio, Nair, Surag, Pachter, Lior, Wang, Austin T., Shendure, Jay, Agarwal, Vikram, Blair, Andrew, Chalkiadakis, Theofilos, Chardon, Florence M., Dash, Pyaree M., Deng, Chengyu, Hamazaki, Nobuhiko, Keukeleire, Pia, Kubo, Connor, Lalanne, Jean-Benoît, Maass, Thorben, Martin, Beth, McDiarmid, Troy A., Nobuhara, Mai, Page, Nicholas F., Regalado, Sam, Sims, Jasmine, Ushiki, Aki, Best, Sabrina M., Boyle, Gabe, Camp, Nathan, Casadei, Silvia, Da, Estelle Y., Dawood, Moez, Dawson, Samantha C., Fayer, Shawn, Hamm, Audrey, James, Richard G., Jarvik, Gail P.

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Efficient and accurate detection of viral sequences at single-cell resolution reveals novel viruses perturbing host gene expression von Luebbert, Laura, Pachter, Lior S.

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Efficient and accurate detection of viral sequences at single-cell resolution reveals novel viruses perturbing host gene expression von Luebbert, Laura, Pachter, Lior S.

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Sample multiplexing for single-cell RNA sequencing von Gehring, Jase, Chen, Siyu, Park, Jong Hwee, Pachter, Lior S

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Computational problems in evolution: Multiple alignment, genome rearrangements, and tree reconstruction von Elias, Isaac

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SAMPLE MULTIPLEXING FOR SINGLE-CELL RNA SEQUENCING von Gehring, Jase, Chen, Siyu, Park, Jong Hwee, Pachter, Lior S

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EFFICIENT COMBINATORIAL BEAD BARCODING von Gehring, Jase, Tambe, Akshay, da Veiga Beltrame, Eduardo, Dilanyan, Taleen, Pachter, Lior S

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Trita-CSC-A von Elias Isaac 1976- , KTH, Numerisk Analys och Datalogi, NADA, Elias Isaac 1976-, KTH, Numerical Analysis and Datalogy, NADA

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Optimization of Air Vehicle Operations Using Mixed-Integer Linear Programming von Schumacher, Corey, Chandler, Phillip R, Pachter, Meir, Pachter, Lior S

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Museum of spatial transcriptomics von Moses, Lambda, Pachter, Lior

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The specious art of single-cell genomics von Chari, Tara, Pachter, Lior

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Streaming fragment assignment for real-time analysis of sequencing experiments von Roberts, Adam, Pachter, Lior

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A discriminative learning approach to differential expression analysis for single-cell RNA-seq von Ntranos, Vasilis, Yi, Lynn, Melsted, Páll, Pachter, Lior

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Modeling bursty transcription and splicing with the chemical master equation von Gorin, Gennady, Pachter, Lior

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Efficient querying of genomic reference databases with gget von Luebbert, Laura, Pachter, Lior

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RNA Velocity: Molecular Kinetics from Single-Cell RNA-Seq von Svensson, Valentine, Pachter, Lior

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