Museum of spatial transcriptomics von Moses, Lambda, Pachter, Lior

Volltext

The specious art of single-cell genomics von Chari, Tara, Pachter, Lior

Volltext

A discriminative learning approach to differential expression analysis for single-cell RNA-seq von Ntranos, Vasilis, Yi, Lynn, Melsted, Páll, Pachter, Lior

Volltext

Interpretable factor models of single-cell RNA-seq via variational autoencoders von Svensson, Valentine, Gayoso, Adam, Yosef, Nir, Pachter, Lior

Volltext

Differential analysis of RNA-seq incorporating quantification uncertainty von Pimentel, Harold, Bray, Nicolas L, Puente, Suzette, Melsted, Páll, Pachter, Lior

Volltext

Identification of novel transcripts in annotated genomes using RNA-Seq von ROBERTS, Adam, PIMENTEL, Harold, TRAPNELL, Cole, PACHTER, Lior

Volltext

RNA velocity unraveled von Gorin, Gennady, Fang, Meichen, Chari, Tara, Pachter, Lior

Volltext

Protein velocity and acceleration from single-cell multiomics experiments von Gorin, Gennady, Svensson, Valentine, Pachter, Lior

Volltext

Publisher Correction: Museum of spatial transcriptomics von Moses, Lambda, Pachter, Lior

Volltext

A curated database reveals trends in single-cell transcriptomics von Svensson, Valentine, da Veiga Beltrame, Eduardo, Pachter, Lior

Volltext

Assessing Markovian and Delay Models for Single-Nucleus RNA Sequencing von Gorin, Gennady, Yoshida, Shawn, Pachter, Lior

Volltext

Association mapping from sequencing reads using k -mers von Rahman, Atif, Hallgrímsdóttir, Ingileif, Eisen, Michael, Pachter, Lior

Volltext

Barcode identification for single cell genomics von Tambe, Akshay, Pachter, Lior

Volltext

Highly multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins von Gehring, Jase, Hwee Park, Jong, Chen, Sisi, Thomson, Matthew, Pachter, Lior

Volltext

Gene-level differential analysis at transcript-level resolution von Yi, Lynn, Pimentel, Harold, Bray, Nicolas L, Pachter, Lior

Volltext

CGAL: computing genome assembly likelihoods von Rahman, Atif, Pachter, Lior

Volltext

RefShannon: A genome-guided transcriptome assembler using sparse flow decomposition von Mao, Shunfu, Pachter, Lior, Tse, David, Kannan, Sreeram

Volltext

Interpretable and tractable models of transcriptional noise for the rational design of single-molecule quantification experiments von Gorin, Gennady, Vastola, John J., Fang, Meichen, Pachter, Lior

Volltext

A Python library for probabilistic analysis of single-cell omics data von Gayoso, Adam, Lopez, Romain, Xing, Galen, Boyeau, Pierre, Valiollah Pour Amiri, Valeh, Hong, Justin, Wu, Katherine, Jayasuriya, Michael, Mehlman, Edouard, Langevin, Maxime, Liu, Yining, Samaran, Jules, Misrachi, Gabriel, Nazaret, Achille, Clivio, Oscar, Xu, Chenling, Ashuach, Tal, Gabitto, Mariano, Lotfollahi, Mohammad, Svensson, Valentine, da Veiga Beltrame, Eduardo, Kleshchevnikov, Vitalii, Talavera-López, Carlos, Pachter, Lior, Theis, Fabian J., Streets, Aaron, Jordan, Michael I., Regier, Jeffrey, Yosef, Nir

Volltext

A dynamic intron retention program enriched in RNA processing genes regulates gene expression during terminal erythropoiesis von Pimentel, Harold, Parra, Marilyn, Gee, Sherry L, Mohandas, Narla, Pachter, Lior, Conboy, John G

Volltext