The specious art of single-cell genomics von Chari, Tara, Pachter, Lior

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RNA velocity unraveled von Gorin, Gennady, Fang, Meichen, Chari, Tara, Pachter, Lior

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Association mapping from sequencing reads using k -mers von Rahman, Atif, Hallgrímsdóttir, Ingileif, Eisen, Michael, Pachter, Lior

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Publisher Correction: Museum of spatial transcriptomics von Moses, Lambda, Pachter, Lior

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Barcode identification for single cell genomics von Tambe, Akshay, Pachter, Lior

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Assessing Markovian and Delay Models for Single-Nucleus RNA Sequencing von Gorin, Gennady, Yoshida, Shawn, Pachter, Lior

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CGAL: computing genome assembly likelihoods von Rahman, Atif, Pachter, Lior

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Trajectory inference from single-cell genomics data with a process time model von Fang, Meichen, Gorin, Gennady, Pachter, Lior

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Length biases in single-cell RNA sequencing of pre-mRNA von Gorin, Gennady, Pachter, Lior

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Interpretable factor models of single-cell RNA-seq via variational autoencoders von Svensson, Valentine, Gayoso, Adam, Yosef, Nir, Pachter, Lior

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A discriminative learning approach to differential expression analysis for single-cell RNA-seq von Ntranos, Vasilis, Yi, Lynn, Melsted, Páll, Pachter, Lior

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Differential analysis of RNA-seq incorporating quantification uncertainty von Pimentel, Harold, Bray, Nicolas L, Puente, Suzette, Melsted, Páll, Pachter, Lior

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Identification of novel transcripts in annotated genomes using RNA-Seq von ROBERTS, Adam, PIMENTEL, Harold, TRAPNELL, Cole, PACHTER, Lior

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MAVID: constrained ancestral alignment of multiple sequences von Bray, Nicolas, Pachter, Lior

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Protein velocity and acceleration from single-cell multiomics experiments von Gorin, Gennady, Svensson, Valentine, Pachter, Lior

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A curated database reveals trends in single-cell transcriptomics von Svensson, Valentine, da Veiga Beltrame, Eduardo, Pachter, Lior

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Museum of spatial transcriptomics von Moses, Lambda, Pachter, Lior

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Gene-level differential analysis at transcript-level resolution von Yi, Lynn, Pimentel, Harold, Bray, Nicolas L, Pachter, Lior

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Highly multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins von Gehring, Jase, Hwee Park, Jong, Chen, Sisi, Thomson, Matthew, Pachter, Lior

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Multiple alignment by sequence annealing von S. Schwartz, Ariel, Pachter, Lior

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