Model selection may not be a mandatory step for phylogeny reconstruction von Abadi, Shiran, Azouri, Dana, Pupko, Tal, Mayrose, Itay

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GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters von Sela, Itamar, Ashkenazy, Haim, Katoh, Kazutaka, Pupko, Tal

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M1CR0B1AL1Z3R-a user-friendly web server for the analysis of large-scale microbial genomics data von Avram, Oren, Rapoport, Dana, Portugez, Shir, Pupko, Tal

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ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules von Ashkenazy, Haim, Abadi, Shiran, Martz, Eric, Chay, Ofer, Mayrose, Itay, Pupko, Tal, Ben-Tal, Nir

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Harnessing machine learning to guide phylogenetic-tree search algorithms von Azouri, Dana, Abadi, Shiran, Mansour, Yishay, Mayrose, Itay, Pupko, Tal

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ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function von Celniker, Gershon, Nimrod, Guy, Ashkenazy, Haim, Glaser, Fabian, Martz, Eric, Mayrose, Itay, Pupko, Tal, Ben-Tal, Nir

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Epitopia: a web-server for predicting B-cell epitopes von Rubinstein, Nimrod D, Mayrose, Itay, Martz, Eric, Pupko, Tal

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Computational modeling and experimental validation of the Legionella and Coxiella virulence-related type-IVB secretion signal von Lifshitz, Ziv, Burstein, David, Peeri, Michael, Zusman, Tal, Schwartz, Kierstyn, Shuman, Howard A, Pupko, Tal, Segal, Gil

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Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades von Blanga-Kanfi, Shani, Miranda, Hector, Penn, Osnat, Pupko, Tal, DeBry, Ronald W, Huchon, Dorothée

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Genome-scale identification of Legionella pneumophila effectors using a machine learning approach von Burstein, David, Zusman, Tal, Degtyar, Elena, Viner, Ram, Segal, Gil, Pupko, Tal

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Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations von McNally, Alan, Oren, Yaara, Kelly, Darren, Pascoe, Ben, Dunn, Steven, Sreecharan, Tristan, Vehkala, Minna, Välimäki, Niko, Prentice, Michael B, Ashour, Amgad, Avram, Oren, Pupko, Tal, Dobrindt, Ulrich, Literak, Ivan, Guenther, Sebastian, Schaufler, Katharina, Wieler, Lothar H, Zhiyong, Zong, Sheppard, Samuel K, McInerney, James O, Corander, Jukka

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COVID‐19 pandemic‐related lockdown: response time is more important than its strictness von Loewenthal, Gil, Abadi, Shiran, Avram, Oren, Halabi, Keren, Ecker, Noa, Nagar, Natan, Mayrose, Itay, Pupko, Tal

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Phylogenetic Distribution and Evolution of Type VI Secretion System in the Genus Xanthomonas von Liyanapathiranage, Prabha, Wagner, Naama, Avram, Oren, Pupko, Tal, Potnis, Neha

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Complete genome sequence of an Israeli isolate of Xanthomonas hortorum pv. pelargonii strain 305 and novel type III effectors identified in Xanthomonas von Wagner, Naama, Ben-Meir, Daniella, Teper, Doron, Pupko, Tal

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PASA: Proteomic analysis of serum antibodies web server von Avram, Oren, Kigel, Aya, Vaisman-Mentesh, Anna, Kligsberg, Sharon, Rosenstein, Shai, Dror, Yael, Pupko, Tal, Wine, Yariv

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Differential GC Content between Exons and Introns Establishes Distinct Strategies of Splice-Site Recognition von Amit, Maayan, Donyo, Maya, Hollander, Dror, Goren, Amir, Kim, Eddo, Gelfman, Sahar, Lev-Maor, Galit, Burstein, David, Schwartz, Schraga, Postolsky, Benny, Pupko, Tal, Ast, Gil

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Identification of novel Xanthomonas euvesicatoria type III effector proteins by a machine‐learning approach von Teper, Doron, Burstein, David, Salomon, Dor, Gershovitz, Michael, Pupko, Tal, Sessa, Guido

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Comparative sequence analysis of pPATH pathogenicity plasmids in Pantoea agglomerans gall-forming bacteria von Geraffi, Naama, Gupta, Priya, Wagner, Naama, Barash, Isaac, Pupko, Tal, Sessa, Guido

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Evolution of myxozoan mitochondrial genomes: insights from myxobolids von Sandberg, Tatiana Orli Milkewitz, Yahalomi, Dayana, Bracha, Noam, Haddas-Sasson, Michal, Pupko, Tal, Atkinson, Stephen D, Bartholomew, Jerri L, Zhang, Jin Yong, Huchon, Dorothée

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Interleukin-6 and Interferon-α Signaling via JAK1-STAT Differentially Regulate Oncolytic versus Cytoprotective Antiviral States von Danziger, Oded, Pupko, Tal, Bacharach, Eran, Ehrlich, Marcelo

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