Evolution pathways of IgE responses to grass and mite allergens throughout childhood von Custovic, Adnan, MD, PhD, Sonntag, Hans-Joachim, MRes, Buchan, Iain E., MD, PhD, Belgrave, Danielle, PhD, Simpson, Angela, MD, PhD, Prosperi, Mattia C.F., PhD

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QuRe: software for viral quasispecies reconstruction from next-generation sequencing data von Prosperi, Mattia C. F., Salemi, Marco

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Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing von Prosperi, Mattia C F, Prosperi, Luciano, Bruselles, Alessandro, Abbate, Isabella, Rozera, Gabriella, Vincenti, Donatella, Solmone, Maria Carmela, Capobianchi, Maria Rosaria, Ulivi, Giovanni

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Predictors of first-line antiretroviral therapy discontinuation due to drug-related adverse events in HIV-infected patients: a retrospective cohort study von Prosperi, Mattia C F, Fabbiani, Massimiliano, Fanti, Iuri, Zaccarelli, Mauro, Colafigli, Manuela, Mondi, Annalisa, D'Avino, Alessandro, Borghetti, Alberto, Cauda, Roberto, Di Giambenedetto, Simona

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Causal inference and counterfactual prediction in machine learning for actionable healthcare von Prosperi, Mattia, Guo, Yi, Sperrin, Matt, Koopman, James S., Min, Jae S., He, Xing, Rich, Shannan, Wang, Mo, Buchan, Iain E., Bian, Jiang

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Emergence of recombinant Mayaro virus strains from the Amazon basin von Mavian, Carla, Rife, Brittany D., Dollar, James Jarad, Cella, Eleonora, Ciccozzi, Massimo, Prosperi, Mattia C. F., Lednicky, John, Morris, J. Glenn, Capua, Ilaria, Salemi, Marco

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Big data hurdles in precision medicine and precision public health von Prosperi, Mattia, Min, Jae S, Bian, Jiang, Modave, François

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The global spread of 2019-nCoV: a molecular evolutionary analysis von Benvenuto, Domenico, Giovanetti, Marta, Salemi, Marco, Prosperi, Mattia, De Flora, Cecilia, Junior Alcantara, Luiz Carlos, Angeletti, Silvia, Ciccozzi, Massimo

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A novel methodology for large-scale phylogeny partition von Prosperi, Mattia C.F., Ciccozzi, Massimo, Fanti, Iuri, Saladini, Francesco, Pecorari, Monica, Borghi, Vanni, Di Giambenedetto, Simona, Bruzzone, Bianca, Capetti, Amedeo, Vivarelli, Angela, Rusconi, Stefano, Re, Maria Carla, Gismondo, Maria Rita, Sighinolfi, Laura, Gray, Rebecca R., Salemi, Marco, Zazzi, Maurizio, De Luca, Andrea

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Fast and exact quantification of motif occurrences in biological sequences von Prosperi, Mattia, Marini, Simone, Boucher, Christina

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The Common Antidiabetic Drug Metformin Reduces Odds of Developing Age-Related Macular Degeneration von Brown, Emily E, Ball, Jacob D, Chen, Zhaoyi, Khurshid, Gibran S, Prosperi, Mattia, Ash, John D

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The K -mer antibiotic resistance gene variant analyzer (KARGVA) von Marini, Simone, Boucher, Christina, Noyes, Noelle, Prosperi, Mattia

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DeepDynaForecast: Phylogenetic-informed graph deep learning for epidemic transmission dynamic prediction von Sun, Chaoyue, Fang, Ruogu, Salemi, Marco, Prosperi, Mattia, Rife Magalis, Brittany

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Challenges in Identifying Asthma Subgroups Using Unsupervised Statistical Learning Techniques von PROSPERI, Mattia C. F, SAHINER, Umit M, BELGRAVE, Danielle, SACKESEN, Cansin, BUCHAN, Iain E, SIMPSON, Angela, YAVUZ, Tolga S, KALAYCI, Omer, CUSTOVIC, Adnan

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Challenges in interpreting allergen microarrays in relation to clinical symptoms: A machine learning approach von Prosperi, Mattia C. F., Belgrave, Danielle, Buchan, Iain, Simpson, Angela, Custovic, Adnan

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Comparative determination of HIV-1 co-receptor tropism by Enhanced Sensitivity Trofile, gp120 V3-loop RNA and DNA genotyping von Prosperi, Mattia C F, Bracciale, Laura, Fabbiani, Massimiliano, Di Giambenedetto, Simona, Razzolini, Francesca, Meini, Genny, Colafigli, Manuela, Marzocchetti, Angela, Cauda, Roberto, Zazzi, Maurizio, De Luca, Andrea

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Declining Prevalence of HIV-1 Drug Resistance in Antiretroviral Treatment-exposed Individuals in Western Europe von De Luca, Andrea, Dunn, David, Zazzi, Maurizio, Camacho, Ricardo, Torti, Carlo, Fanti, Iuri, Kaiser, Rolf, Sönnerborg, Anders, Codoñer, Francisco M., Van Laethem, Kristel, Vandamme, Anne-Mieke, Bansi, Loveleen, Ghisetti, Valeria, van de Vijver, David A. M. C., Asboe, David, Prosperi, Mattia C. F., Di Giambenedetto, Simona

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An ontology-based documentation of data discovery and integration process in cancer outcomes research von Zhang, Hansi, Guo, Yi, Prosperi, Mattia, Bian, Jiang

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Use of Massively Parallel Ultradeep Pyrosequencing To Characterize the Genetic Diversity of Hepatitis B Virus in Drug-Resistant and Drug-Naive Patients and To Detect Minor Variants... von SOLMONE, Mariacarmela, VINCENTI, Donatella, PROSPERI, Mattia Carlo Felice, BRUSELLES, Alessandro, IPPOLITO, Giuseppe, ROSARIA CAPOBIANCHI, Maria

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Mining Twitter to Assess the Public Perception of the "Internet of Things" von Bian, Jiang, Yoshigoe, Kenji, Hicks, Amanda, Yuan, Jiawei, He, Zhe, Xie, Mengjun, Guo, Yi, Prosperi, Mattia, Salloum, Ramzi, Modave, François

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