Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing von Lee, Charles K, Herbold, Craig W, Polson, Shawn W, Wommack, K Eric, Williamson, Shannon J, McDonald, Ian R, Cary, S Craig

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effect of nutrient deposition on bacterial communities in Arctic tundra soil von Campbell, Barbara J, Polson, Shawn W, Hanson, Thomas E, Mack, Michelle C, Schuur, Edward A.G

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Impacts of poultry house environment on poultry litter bacterial community composition von Dumas, Michael D, Polson, Shawn W, Ritter, Don, Ravel, Jacques, Gelb, Jr, Jack, Morgan, Robin, Wommack, K Eric

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Improvements in viral gene annotation using large language models and soft alignments von Harrigan, William L, Ferrell, Barbra D, Wommack, K Eric, Polson, Shawn W, Schreiber, Zachary D, Belcaid, Mahdi

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Identification of Chondrocyte Genes and Signaling Pathways in Response to Acute Joint Inflammation von Lv, Mengxi, Zhou, Yilu, Polson, Shawn W., Wan, Leo Q., Wang, Meiqing, Han, Lin, Wang, Liyun, Lu, X. Lucas

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Genome sequencing and transcript analysis of Hemileia vastatrix reveal expression dynamics of candidate effectors dependent on host compatibility von Porto, Brenda Neves, Caixeta, Eveline Teixeira, Mathioni, Sandra Marisa, Vidigal, Pedro Marcus Pereira, Zambolim, Laércio, Zambolim, Eunize Maciel, Donofrio, Nicole, Polson, Shawn W, Maia, Thiago Andrade, Chen, Chuming, Adetunji, Modupe, Kingham, Brewster, Dalio, Ronaldo José Durigan, Resende, Mário Lúcio Vilela de

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Urbanization pressures alter tree rhizosphere microbiomes von Rosier, Carl L., Polson, Shawn W., D’Amico, Vincent, Kan, Jinjun, Trammell, Tara L. E.

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Bioremediation of copper in sediments from a constructed wetland ex situ with the novel bacterium Cupriavidus basilensis SRS von Kugler, Alex, Brigmon, Robin L., Friedman, Abby, Coutelot, Fanny M., Polson, Shawn W., Seaman, John C., Simpson, Waltena

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Iroki: automatic customization and visualization of phylogenetic trees von Moore, Ryan M., Harrison, Amelia O., McAllister, Sean M., Polson, Shawn W., Wommack, K. Eric

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Soybean Bradyrhizobium spp. Spontaneously Produce Abundant and Diverse Temperate Phages in Culture von Richards, Vanessa A, Ferrell, Barbra D, Polson, Shawn W, Wommack, K Eric, Fuhrmann, Jeffry J

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Novel chaperonins are prevalent in the virioplankton and demonstrate links to viral biology and ecology von Marine, Rachel L, Nasko, Daniel J, Wray, Jeffrey, Polson, Shawn W, Wommack, K Eric

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Spontaneously Produced Lysogenic Phages Are an Important Component of the Soybean Bradyrhizobium Mobilome von Joglekar, Prasanna, Ferrell, Barbra D, Jarvis, Tessa, Haramoto, Kona, Place, Nicole, Dums, Jacob T, Polson, Shawn W, Wommack, K Eric, Fuhrmann, Jeffry J

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Evaluation of a Transposase Protocol for Rapid Generation of Shotgun High-Throughput Sequencing Libraries from Nanogram Quantities of DNA von MARINE, Rachel, POLSON, Shawn W, RAVEL, Jacques, HATFULL, Graham, RUSSELL, Daniel, SULLIVAN, Matthew, SYED, Fraz, DUMAS, Michael, ERIC WOMMACK, K

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Towards an integrative view of virus phenotypes von DeLong, John P., Al-Sammak, Maitham A., Al-Ameeli, Zeina T., Dunigan, David D., Edwards, Kyle F., Fuhrmann, Jeffry J., Gleghorn, Jason P., Li, Hanqun, Haramoto, Kona, Harrison, Amelia O., Marston, Marcia F., Moore, Ryan M., Polson, Shawn W., Ferrell, Barbra D., Salsbery, Miranda E., Schvarcz, Christopher R., Shirazi, Jasmine, Steward, Grieg F., Van Etten, James L., Wommack, K. Eric

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Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses von Sakowski, Eric G., Munsell, Erik V., Hyatt, Mara, Kress, William, Williamson, Shannon J., Nasko, Daniel J., Polson, Shawn W., Wommack, K. Eric

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Validating the Cyc2 Neutrophilic Iron Oxidation Pathway Using Meta-omics of Zetaproteobacteria Iron Mats at Marine Hydrothermal Vents von Mcallister, Sean M., Polson, Shawn W., Butterfield, David A., Glazer, Brian T., Sylvan, Jason B., Chan, Clara S.

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Investigation of allele specific expression in various tissues of broiler chickens using the detection tool VADT von Tomlinson, M. Joseph, Polson, Shawn W., Qiu, Jing, Lake, Juniper A., Lee, William, Abasht, Behnam

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Gallionellaceae pangenomic analysis reveals insight into phylogeny, metabolic flexibility, and iron oxidation mechanisms von Hoover, Rene L, Keffer, Jessica L, Polson, Shawn W, Chan, Clara S

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CRISPR Spacers Indicate Preferential Matching of Specific Virioplankton Genes von Nasko, Daniel J, Ferrell, Barbra D, Moore, Ryan M, Bhavsar, Jaysheel D, Polson, Shawn W, Wommack, K Eric

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Reannotation of the Ribonucleotide Reductase in a Cyanophage Reveals Life History Strategies Within the Virioplankton von Harrison, Amelia O, Moore, Ryan M, Polson, Shawn W, Wommack, K Eric

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