Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library von Sánchez, Cecilia Castaño, Smith, Timothy P L, Wiedmann, Ralph T, Vallejo, Roger L, Salem, Mohamed, Yao, Jianbo, Rexroad, 3rd, Caird E

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MicroRNA transcriptome profiles during swine skeletal muscle development von McDaneld, Tara G, Smith, Timothy P L, Doumit, Matthew E, Miles, Jeremy R, Coutinho, Luiz L, Sonstegard, Tad S, Matukumalli, Lakshmi K, Nonneman, Dan J, Wiedmann, Ralph T

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A deletion mutation in bovine SLC4A2 is associated with osteopetrosis in Red Angus cattle von Meyers, Stacey N, McDaneld, Tara G, Swist, Shannon L, Marron, Brandy M, Steffen, David J, O'Toole, Donal, O'Connell, Jeffrey R, Beever, Jonathan E, Sonstegard, Tad S, Smith, Timothy P L

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Development and Characterization of a High Density SNP Genotyping Assay for Cattle von Matukumalli, Lakshmi K, Lawley, Cynthia T, Schnabel, Robert D, Taylor, Jeremy F, Allan, Mark F, Heaton, Michael P, O'Connell, Jeff, Moore, Stephen S, Smith, Timothy P.L, Sonstegard, Tad S, Van Tassell, Curtis P

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Phylogenetic classification of Escherichia coli O157:H7 strains of human and bovine origin using a novel set of nucleotide polymorphisms von Clawson, Michael L, Keen, James E, Smith, Timothy P.L, Durso, Lisa M, McDaneld, Tara G, Mandrell, Robert E, Davis, Margaret A, Bono, James L

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Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history von Zhou, Yang, Yang, Lv, Han, Xiaotao, Han, Jiazheng, Hu, Yan, Li, Fan, Xia, Han, Peng, Lingwei, Boschiero, Clarissa, Rosen, Benjamin D, Bickhart, Derek M, Zhang, Shujun, Guo, Aizhen, Van Tassell, Curtis P, Smith, Timothy P L, Yang, Liguo, Liu, George E

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Linkage mapping bovine EST-based SNP von Snelling, Warren M, Casas, Eduardo, Stone, Roger T, Keele, John W, Harhay, Gregory P, Bennett, Gary L, Smith, Timothy P L

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Association, effects and validation of polymorphisms within the NCAPG - LCORL locus located on BTA6 with feed intake, gain, meat and carcass traits in beef cattle von Lindholm-Perry, Amanda K, Sexten, Andrea K, Kuehn, Larry A, Smith, Timothy P.L, King, D. Andy, Shackelford, Steven D, Wheeler, Tommy L, Ferrell, Calvin L, Jenkins, Thomas G, Snelling, Warren M, Freetly, Harvey C

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Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers von Myer, Phillip R., Kim, MinSeok, Freetly, Harvey C., Smith, Timothy P.L.

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Variations in antibody repertoires correlate with vaccine responses von Safonova, Yana, Shin, Sung Bong, Kramer, Luke, Reecy, James, Watson, Corey T, Smith, Timothy P L, Pevzner, Pavel A

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Reducing assembly complexity of microbial genomes with single-molecule sequencing von Koren, Sergey, Harhay, Gregory P, Smith, Timothy P L, Bono, James L, Harhay, Dayna M, Mcvey, Scott D, Radune, Diana, Bergman, Nicholas H, Phillippy, Adam M

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Characterization of 954 bovine full-CDS cDNA sequences von Harhay, Gregory P, Sonstegard, Tad S, Keele, John W, Heaton, Michael P, Clawson, Michael L, Snelling, Warren M, Wiedmann, Ralph T, Van Tassell, Curt P, Smith, Timothy P L

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Ovine reference materials and assays for prion genetic testing von Heaton, Michael P, Leymaster, Kreg A, Kalbfleisch, Theodore S, Freking, Brad A, Smith, Timothy P L, Clawson, Michael L, Laegreid, William W

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Virulence-associated and antibiotic resistance genes of microbial populations in cattle feces analyzed using a metagenomic approach von Durso, Lisa M., Harhay, Gregory P., Bono, James L., Smith, Timothy P.L.

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Reduced lentivirus susceptibility in sheep with TMEM154 mutations von Heaton, Michael P, Clawson, Michael L, Chitko-Mckown, Carol G, Leymaster, Kreg A, Smith, Timothy P L, Harhay, Gregory P, White, Stephen N, Herrmann-Hoesing, Lynn M, Mousel, Michelle R, Lewis, Gregory S, Kalbfleisch, Theodore S, Keen, James E, Laegreid, William W

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The evolution of the natural killer complex; a comparison between mammals using new high-quality genome assemblies and targeted annotation von Schwartz, John C., Gibson, Mark S., Heimeier, Dorothea, Koren, Sergey, Phillippy, Adam M., Bickhart, Derek M., Smith, Timothy P. L., Medrano, Juan F., Hammond, John A.

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Comparative Methylome Analysis of the Occasional Ruminant Respiratory Pathogen Bibersteinia trehalosi von Anton, Brian P, Harhay, Gregory P, Smith, Timothy P L, Blom, Jochen, Roberts, Richard J

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Resolving Bovine viral diarrhea virus subtypes from persistently infected U.S. beef calves with complete genome sequence von Workman, Aspen M., Heaton, Michael P., Harhay, Gregory P., Smith, Timothy P. L., Grotelueschen, Dale M., Sjeklocha, David, Brodersen, Bruce, Petersen, Jessica L., Chitko-McKown, Carol G.

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Comparative genomics of the Campylobacter lari group von Miller, William G, Yee, Emma, Chapman, Mary H, Smith, Timothy P L, Bono, James L, Huynh, Steven, Parker, Craig T, Vandamme, Peter, Luong, Khai, Korlach, Jonas

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The artiodactyl APOBEC3 innate immune repertoire shows evidence for a multi-functional domain organization that existed in the ancestor of placental mammals von LaRue, Rebecca S, Jónsson, Stefán R, Silverstein, Kevin A T, Lajoie, Mathieu, Bertrand, Denis, El-Mabrouk, Nadia, Hötzel, Isidro, Andrésdóttir, Valgerdur, Smith, Timothy P L, Harris, Reuben S

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