An in-silico human cell model reveals the influence of spatial organization on RNA splicing von Ghaemi, Zhaleh, Peterson, Joseph R, Gruebele, Martin, Luthey-Schulten, Zaida

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Parametric studies of metabolic cooperativity in Escherichia coli colonies: Strain and geometric confinement effects von Peterson, Joseph R, Cole, John A, Luthey-Schulten, Zaida

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Effects of DNA replication on mRNA noise von Peterson, Joseph R., Cole, John A., Fei, Jingyi, Ha, Taekjip, Luthey-Schulten, Zaida A.

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Novel computational biology modeling system can accurately forecast response to neoadjuvant therapy in early breast cancer von Peterson, Joseph R, Cole, John A, Pfeiffer, John R, Norris, Gregory H, Zhang, Yuhan, Lopez-Ramos, Dorys, Pandey, Tushar, Biancalana, Matthew, Esslinger, Hope R, Antony, Anuja K, Takiar, Vinita

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Correction: Parametric studies of metabolic cooperativity in Escherichia coli colonies: Strain and geometric confinement effects von Peterson, Joseph R, Cole, John A, Luthey-Schulten, Zaida

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Genome-Scale Metabolic Modeling of Archaea Lends Insight into Diversity of Metabolic Function von Thor, ShengShee, Luthey-Schulten, Zaida, Peterson, Joseph R.

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Performance of an AI-powered visualization software platform for precision surgery in breast cancer patients von Weitz, Michelle, Pfeiffer, J. R., Patel, Snehal, Biancalana, Matthew, Pekis, Arda, Kannan, Vignesh, Kaklamanos, Evandros, Parker, Amanda, Bucksot, Jesse E., Romera, José Rubio, Alvin, Ryan, Zhang, Yuhan, Stefka, Andrew T., Lopez-Ramos, Dorys, Peterson, Joseph R., Antony, Anuja K., Zamora, Kathryn W., Woodard, Stefanie

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Next generation immuno-oncology tumor profiling using a rapid, non-invasive, computational biophysics biomarker in early-stage breast cancer von Cook, Daniel, Biancalana, Matthew, Liadis, Nicole, Lopez Ramos, Dorys, Zhang, Yuhan, Patel, Snehal, Peterson, Joseph R, Pfeiffer, John R, Cole, John A, Antony, Anuja K

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Experimental Protein Structure Verification by Scoring with a Single, Unassigned NMR Spectrum von Courtney, Joseph M., Ye, Qing, Nesbitt, Anna E., Tang, Ming, Tuttle, Marcus D., Watt, Eric D., Nuzzio, Kristin M., Sperling, Lindsay J., Comellas, Gemma, Peterson, Joseph R., Morrissey, James H., Rienstra, Chad M.

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Highly accurate response prediction in high-risk early breast cancer patients using a biophysical simulation platform von Howard, Frederick M., He, Gong, Peterson, Joseph R., Pfeiffer, J. R., Earnest, Tyler, Pearson, Alexander T., Abe, Hiroyuki, Cole, John A., Nanda, Rita

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Towards a Computational Model of a Methane Producing Archaeum von Peterson, Joseph R., Labhsetwar, Piyush, Ellermeier, Jeremy R., Kohler, Petra R. A., Jain, Ankur, Ha, Taekjip, Metcalf, William W., Luthey-Schulten, Zaida

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Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans von Peterson, Joseph R, Thor, ShengShee, Kohler, Lars, Kohler, Petra R A, Metcalf, William W, Luthey-Schulten, Zaida

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Ribosome biogenesis in replicating cells: Integration of experiment and theory von Earnest, Tyler M., Cole, John A., Peterson, Joseph R., Hallock, Michael J., Kuhlman, Thomas E., Luthey‐Schulten, Zaida

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An Eulerian–Lagrangian computational model for deflagration and detonation of high explosives von Peterson, Joseph R., Wight, Charles A.

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Hybrid CME–ODE method for efficient simulation of the galactose switch in yeast von Bianchi, David M, Peterson, Joseph R, Earnest, Tyler M, Hallock, Michael J, Luthey-Schulten, Zaida

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DCE-MRI-derived microvasculature mapping and outcome prediction in patients with breast cancer von Stefka, Andrew T., Feiger, Bradley, Pfeiffer, John R., Pandey, Tushar, Peterson, Joseph R., Antony, Anuja K.

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Novel imaging marker for low- and mid-recurrence score patients at risk for recurrence von Peterson, Joseph R, Antony, Anu K., Team, The SimBioSys, Cole, John A.

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Association of biophysics-based biomarker with tumor volumetric response in breast cancer treated with immunotherapy von Cook, Daniel, Pfeiffer, John R., Peterson, Joseph R., Liadis, Nicole, Biancalana, Matthew, Lopez, Dorys, Cole, John A., Antony, Anuja K.

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Abstract P4-06-02: Clinically feasible pharmacokinetic model of dynamic contrast-enhanced MRI is prognostic of recurrence free survival in breast cancer patients treated with neoad... von Peterson, Joseph R, Earnest, Tyler M., Huang, Wei, Abe, Hiroyuki, Cole, John A

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Abstract P5-13-34: A multi-modal biomarker of immunotherapy response von Pfeiffer, JR, Peterson, Joseph R., Howard, Frederick, Earnest, Tyler M., Pandey, Tushar, He, Gong, Nanda, Rita

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