Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing von Ranjan, Ravi, Rani, Asha, Metwally, Ahmed, McGee, Halvor S., Perkins, David L.

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Long non-coding RNAs (lncRNAs) NEAT1 and MALAT1 are differentially expressed in severe COVID-19 patients: An integrated single-cell analysis von Huang, Kai, Wang, Catherine, Vagts, Christen, Raguveer, Vanitha, Finn, Patricia W, Perkins, David L

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Effect of the Obesity Epidemic on Kidney Transplantation: Obesity Is Independent of Diabetes as a Risk Factor for Adverse Renal Transplant Outcomes von Kwan, Jennifer M, Hajjiri, Zahraa, Metwally, Ahmed, Finn, Patricia W, Perkins, David L

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Utilizing longitudinal microbiome taxonomic profiles to predict food allergy via Long Short-Term Memory networks von Metwally, Ahmed A, Yu, Philip S, Reiman, Derek, Dai, Yang, Finn, Patricia W, Perkins, David L

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Transmission Dynamics of Large Coronavirus Disease Outbreak in Homeless Shelter, Chicago, Illinois, USA, 2020 von Chang, Yi-Shin, Mayer, Stockton, Davis, Elizabeth S, Figueroa, Evelyn, Leo, Paul, Finn, Patricia W, Perkins, David L

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WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial Sequences von Metwally, Ahmed A, Dai, Yang, Finn, Patricia W, Perkins, David L

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Altered transcription factor targeting is associated with differential peripheral blood mononuclear cell proportions in sarcoidosis von Ascoli, Christian, Schott, Cody A, Huang, Yue, Turturice, Benjamin A, Wang, Wangfei, Ecanow, Naomi, Sweiss, Nadera J, Perkins, David L, Finn, Patricia W

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Bronchiolitis obliterans syndrome susceptibility and the pulmonary microbiome von Schott, Cody, Weigt, S. Samuel, Turturice, Benjamin A., Metwally, Ahmed, Belperio, John, Finn, Patricia W., Perkins, David L.

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Atopic asthmatic immune phenotypes associated with airway microbiota and airway obstruction von Turturice, Benjamin A, McGee, Halvor S, Oliver, Brian, Baraket, Melissa, Nguyen, Brian T, Ascoli, Christian, Ranjan, Ravi, Rani, Asha, Perkins, David L, Finn, Patricia W

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Imaging systems and algorithms to analyze biological samples in real-time using mobile phone microscopy von Shanmugam, Akshaya, Usmani, Mohammad, Mayberry, Addison, Perkins, David L, Holcomb, Daniel E

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MetaLonDA: a flexible R package for identifying time intervals of differentially abundant features in metagenomic longitudinal studies von Metwally, Ahmed A, Yang, Jie, Ascoli, Christian, Dai, Yang, Finn, Patricia W, Perkins, David L

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Analysis of Exosomal MicroRNA Dynamics in Response to Rhinovirus Challenge in a Longitudinal Case-Control Study of Asthma von Wang, Wangfei, Sinha, Anirban, Lutter, René, Yang, Jie, Ascoli, Christian, Sterk, Peter J, Nemsick, Nicole K, Perkins, David L, Finn, Patricia W

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Urinary microbiome of kidney transplant patients reveals dysbiosis with potential for antibiotic resistance von Rani, Asha, PhD, Ranjan, Ravi, PhD, McGee, Halvor S., PhD, Andropolis, Kalista E., MS, Panchal, Dipti V., MS, Hajjiri, Zahraa, MD, Brennan, Daniel C., MD, Finn, Patricia W., MD, Perkins, David L., MD, PhD

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Perinatal granulopoiesis and risk of pediatric asthma von Turturice, Benjamin A, Theorell, Juliana, Koenig, Mary Dawn, Tussing-Humphreys, Lisa, Gold, Diane R, Litonjua, Augusto A, Oken, Emily, Rifas-Shiman, Sheryl L, Perkins, David L, Finn, Patricia W

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Hubs in biological interaction networks exhibit low changes in expression in experimental asthma von Lu, Xin, Jain, Vipul V, Finn, Patricia W, Perkins, David L

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The Potential for Emerging Microbiome-Mediated Therapeutics in Asthma von Ozturk, Ayse Bilge, Turturice, Benjamin Arthur, Perkins, David L., Finn, Patricia W.

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Network Analysis of Dysregulated Immune Response to COVID-19 mRNA Vaccination in Hemodialysis Patients von Chang, Yi-Shin, Lee, Jessica M, Huang, Kai, Vagts, Christen L, Ascoli, Christian, Edafetanure-Ibeh, Russell, Huang, Yue, Cherian, Ruth A, Sarup, Nandini, Warpecha, Samantha R, Hwang, Sunghyun, Goel, Rhea, Turturice, Benjamin A, Schott, Cody, Martinez, Montserrat H, Finn, Patricia W, Perkins, David L

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Unsupervised Clustering Reveals Sarcoidosis Phenotypes Marked by a Reduction in Lymphocytes Relate to Increased Inflammatory Activity on 18FDG-PET/CT von Vagts, Christen, Ascoli, Christian, Fraidenburg, Dustin R, Baughman, Robert P, Huang, Yue, Edafetanure-Ibeh, Russell, Ahmed, Samreen, Levin, Benjamin, Lu, Yang, Perkins, David L, Finn, Patricia W, Sweiss, Nadera J

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Graft produced interleukin-6 functions as a danger signal and promotes rejection after transplantation von YURONG LIANG, CHRISTOPHER, Kenneth, FINN, Patricia W, COLSON, Yolonda L, PERKINS, David L

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Trimer IgG and neutralising antibody response to COVID-19 mRNA vaccination in individuals with sarcoidosis von Vagts, Christen L, Chang, Yi-Shin, Ascoli, Christian, Lee, Jessica M, Huang, Kai, Huang, Yue, Cherian, Ruth A, Sarup, Nandini, Warpecha, Samantha R, Edafetanure-Ibeh, Russell, Amin, Md-Ruhul, Sultana, Tasmin, Ghassemi, Mahmood, Sweiss, Nadera J, Novak, Richard, Perkins, David L, Finn, Patricia W

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