Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates von Häkkinen, Mari, Arvas, Mikko, Oja, Merja, Aro, Nina, Penttilä, Merja, Saloheimo, Markku, Pakula, Tiina M

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In Vitro Synthesis and Self-Assembly of Cellulose II Nanofibrils Catalyzed by the Reverse Reaction of Clostridium thermocellum Cellodextrin Phosphorylase von Pylkkänen, Robert, Mohammadi, Pezhman, Arola, Suvi, de Ruijter, Jorg C, Sunagawa, Naoki, Igarashi, Kiyohiko, Penttilä, Merja

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Synthetic Toolkit for Complex Genetic Circuit Engineering in Saccharomyces cerevisiae von Rantasalo, Anssi, Kuivanen, Joosu, Penttilä, Merja, Jäntti, Jussi, Mojzita, Dominik

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Transformation System for Hypocrea jecorina (Trichoderma reesei) That Favors Homologous Integration and Employs Reusable Bidirectionally Selectable Markers von Steiger, Matthias G, Vitikainen, Marika, Uskonen, Pekka, Brunner, Kurt, Adam, Gerhard, Pakula, Tiina, Penttilä, Merja, Saloheimo, Markku, Mach, Robert L, Mach-Aigner, Astrid R

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Genetic Modification of Carbon Catabolite Repression in Trichoderma reesei for Improved Protein Production von Nakari-Setälä, Tiina, Paloheimo, Marja, Kallio, Jarno, Vehmaanperä, Jari, Penttilä, Merja, Saloheimo, Markku

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Production of ethylene glycol or glycolic acid from D-xylose in Saccharomyces cerevisiae von Salusjärvi, Laura, Toivari, Mervi, Vehkomäki, Maija-Leena, Koivistoinen, Outi, Mojzita, Dominik, Niemelä, Klaus, Penttilä, Merja, Ruohonen, Laura

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Substrate specificity of 2-deoxy-D-ribose 5-phosphate aldolase (DERA) assessed by different protein engineering and machine learning methods von Voutilainen, Sanni, Heinonen, Markus, Andberg, Martina, Jokinen, Emmi, Maaheimo, Hannu, Pääkkönen, Johan, Hakulinen, Nina, Rouvinen, Juha, Lähdesmäki, Harri, Kaski, Samuel, Rousu, Juho, Penttilä, Merja, Koivula, Anu

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Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species von Pitkänen, Esa, Jouhten, Paula, Hou, Jian, Syed, Muhammad Fahad, Blomberg, Peter, Kludas, Jana, Oja, Merja, Holm, Liisa, Penttilä, Merja, Rousu, Juho, Arvas, Mikko

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Phase transitions as intermediate steps in the formation of molecularly engineered protein fibers von Mohammadi, Pezhman, Aranko, A. Sesilja, Lemetti, Laura, Cenev, Zoran, Zhou, Quan, Virtanen, Salla, Landowski, Christopher P., Penttilä, Merja, Fischer, Wolfgang J., Wagermaier, Wolfgang, Linder, Markus B.

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Efficient Production of L-Lactic Acid from Xylose by Pichia stipitis von Ilmén, Marja, Koivuranta, Kari, Ruohonen, Laura, Suominen, Pirkko, Penttilä, Merja

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Hydrophobins: the protein-amphiphiles of filamentous fungi von Linder, Markus B., Szilvay, Géza R., Nakari-Setälä, Tiina, Penttilä, Merja E.

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The Crystal Structure of a Bacterial l‑Arabinonate Dehydratase Contains a [2Fe-2S] Cluster von Rahman, Mohammad Mubinur, Andberg, Martina, Thangaraj, Senthil Kumar, Parkkinen, Tarja, Penttilä, Merja, Jänis, Janne, Koivula, Anu, Rouvinen, Juha, Hakulinen, Nina

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Metabolic Engineering of Fungal Strains for Conversion of D-Galacturonate to meso-Galactarate von Mojzita, Dominik, Wiebe, Marilyn, Hilditch, Satu, Boer, Harry, Penttilä, Merja, Richard, Peter

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Correlation of gene expression and protein production rate - a system wide study von Arvas, Mikko, Pakula, Tiina, Smit, Bart, Rautio, Jari, Koivistoinen, Heini, Jouhten, Paula, Lindfors, Erno, Wiebe, Marilyn, Penttilä, Merja, Saloheimo, Markku

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Glycolic acid production in the engineered yeasts Saccharomyces cerevisiae and Kluyveromyces lactis von Koivistoinen, Outi M, Kuivanen, Joosu, Barth, Dorothee, Turkia, Heidi, Pitkänen, Juha-Pekka, Penttilä, Merja, Richard, Peter

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Bioprocess performance analysis of novel methanol-independent promoters for recombinant protein production with Pichia pastoris von Garrigos-Martinez, Javier, Vuoristo, Kiira, Nieto-Taype, Miguel Angel, Taehtiharju, Juha, Uusitalo, Jaana, Tukiainen, Pauliina, Schmid, Christian, Tolstorukov, Ilya, Madden, Knut, Penttila, Merja, Montesinos-Segui, Jose Luis, Valero, Francisco, Glieder, Anton, Garcia-Ortega, Xavier

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Yeast Oligo-Mediated Genome Engineering (YOGE) von DiCarlo, James E, Conley, Andrew J, Penttilä, Merja, Jäntti, Jussi, Wang, Harris H, Church, George M

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Solar-Powered Carbon Fixation for Food and Feed Production Using MicroorganismsA Comparative Techno-Economic Analysis von Nappa, Marja, Lienemann, Michael, Tossi, Camilla, Blomberg, Peter, Jäntti, Jussi, Tittonen, Ilkka Juhani, Penttilä, Merja

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Enabling Low Cost Biopharmaceuticals: A Systematic Approach to Delete Proteases from a Well-Known Protein Production Host Trichoderma reesei von Landowski, Christopher P, Huuskonen, Anne, Wahl, Ramon, Westerholm-Parvinen, Ann, Kanerva, Anne, Hänninen, Anna-Liisa, Salovuori, Noora, Penttilä, Merja, Natunen, Jari, Ostermeier, Christian, Helk, Bernhard, Saarinen, Juhani, Saloheimo, Markku

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Synthetic Transcription Amplifier System for Orthogonal Control of Gene Expression in Saccharomyces cerevisiae von Rantasalo, Anssi, Czeizler, Elena, Virtanen, Riitta, Rousu, Juho, Lähdesmäki, Harri, Penttilä, Merja, Jäntti, Jussi, Mojzita, Dominik

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