Genome evolution and the emergence of pathogenicity in avian Escherichia coli von Mageiros, Leonardos, Méric, Guillaume, Bayliss, Sion C., Pensar, Johan, Pascoe, Ben, Mourkas, Evangelos, Calland, Jessica K., Yahara, Koji, Murray, Susan, Wilkinson, Thomas S., Williams, Lisa K., Hitchings, Matthew D., Porter, Jonathan, Kemmett, Kirsty, Feil, Edward J., Jolley, Keith A., Williams, Nicola J., Corander, Jukka, Sheppard, Samuel K.

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Labeled directed acyclic graphs: a generalization of context-specific independence in directed graphical models von Pensar, Johan, Nyman, Henrik, Koski, Timo, Corander, Jukka

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Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis von Méric, Guillaume, Mageiros, Leonardos, Pensar, Johan, Laabei, Maisem, Yahara, Koji, Pascoe, Ben, Kittiwan, Nattinee, Tadee, Phacharaporn, Post, Virginia, Lamble, Sarah, Bowden, Rory, Bray, James E., Morgenstern, Mario, Jolley, Keith A., Maiden, Martin C. J., Feil, Edward J., Didelot, Xavier, Miragaia, Maria, de Lencastre, Herminia, Moriarty, T. Fintan, Rohde, Holger, Massey, Ruth, Mack, Dietrich, Corander, Jukka, Sheppard, Samuel K.

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DagSim: Combining DAG-based model structure with unconstrained data types and relations for flexible, transparent, and modularized data simulation von Al Hajj, Ghadi S, Pensar, Johan, Sandve, Geir K

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High-dimensional structure learning of sparse vector autoregressive models using fractional marginal pseudo-likelihood von Suotsalo, Kimmo, Xu, Yingying, Corander, Jukka, Pensar, Johan

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A logical approach to context-specific independence von Corander, Jukka, Hyttinen, Antti, Kontinen, Juha, Pensar, Johan, Väänänen, Jouko

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Author Correction: Genome evolution and the emergence of pathogenicity in avian Escherichia coli von Mageiros, Leonardos, Méric, Guillaume, Bayliss, Sion C., Pensar, Johan, Pascoe, Ben, Mourkas, Evangelos, Calland, Jessica K., Yahara, Koji, Murray, Susan, Wilkinson, Thomas S., Williams, Lisa K., Hitchings, Matthew D., Porter, Jonathan, Kemmett, Kirsty, Feil, Edward J., Jolley, Keith A., Williams, Nicola J., Corander, Jukka, Sheppard, Samuel K.

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High-dimensional structure learning of binary pairwise Markov networks: A comparative numerical study von Pensar, Johan, Xu, Yingying, Puranen, Santeri, Pesonen, Maiju, Kabashima, Yoshiyuki, Corander, Jukka

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A Bayesian Decision-Support Tool for Child Sexual Abuse Assessment and Investigation von Tadei, Alessandro, Pensar, Johan, Corander, Jukka, Finnilä, Katarina, Santtila, Pekka, Antfolk, Jan

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New Pathogenesis Mechanisms and Translational Leads Identified by Multidimensional Analysis of Necrotizing Myositis in Primates von Kachroo, Priyanka, Eraso, Jesus M, Olsen, Randall J, Zhu, Luchang, Kubiak, Samantha L, Pruitt, Layne, Yerramilli, Prasanti, Cantu, Concepcion C, Ojeda Saavedra, Matthew, Pensar, Johan, Corander, Jukka, Jenkins, Leslie, Kao, Lillian, Granillo, Alejandro, Porter, Adeline R, DeLeo, Frank R, Musser, James M

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The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires von Pavlović, Milena, Scheffer, Lonneke, Motwani, Keshav, Kanduri, Chakravarthi, Kompova, Radmila, Vazov, Nikolay, Waagan, Knut, Bernal, Fabian L. M., Costa, Alexandre Almeida, Corrie, Brian, Akbar, Rahmad, Al Hajj, Ghadi S., Balaban, Gabriel, Brusko, Todd M., Chernigovskaya, Maria, Christley, Scott, Cowell, Lindsay G., Frank, Robert, Grytten, Ivar, Gundersen, Sveinung, Haff, Ingrid Hobæk, Hovig, Eivind, Hsieh, Ping-Han, Klambauer, Günter, Kuijjer, Marieke L., Lund-Andersen, Christin, Martini, Antonio, Minotto, Thomas, Pensar, Johan, Rand, Knut, Riccardi, Enrico, Robert, Philippe A., Rocha, Artur, Slabodkin, Andrei, Snapkov, Igor, Sollid, Ludvig M., Titov, Dmytro, Weber, Cédric R., Widrich, Michael, Yaari, Gur, Greiff, Victor, Sandve, Geir Kjetil

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The Genetics of Sexuality and Aggression (GSA) Twin Samples in Finland von Johansson, Ada, Jern, Patrick, Santtila, Pekka, von der Pahlen, Bettina, Eriksson, Elias, Westberg, Lars, Nyman, Henrik, Pensar, Johan, Corander, Jukka, Sandnabba, N. Kenneth

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SuperDCA for genome-wide epistasis analysis von Puranen, Santeri, Pesonen, Maiju, Pensar, Johan, Xu, Ying Ying, Lees, John A, Bentley, Stephen D, Croucher, Nicholas J, Corander, Jukka

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Locally interpretable tree boosting: An application to house price prediction von Hjort, Anders, Scheel, Ida, Sommervoll, Dag Einar, Pensar, Johan

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Locally interpretable tree boosting: An application to house price prediction von Hjort, Anders Dahl, Scheel, Ida, Sommervoll, Dag Einar, Pensar, Johan

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Locally interpretable tree boosting: An application to house price prediction von Hjort, Anders Dahl, Scheel, Ida, Sommervoll, Dag Einar, Pensar, Johan

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House price prediction with gradient boosted trees under different loss functions von Hjort, Anders, Pensar, Johan, Scheel, Ida, Sommervoll, Dag Einar

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Representing local structure in Bayesian networks by Boolean functions von Zou, Yuan, Pensar, Johan, Roos, Teemu

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Causal discovery for the microbiome von Corander, Jukka, Hanage, William P, Pensar, Johan

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Plasmids Shaped the Recent Emergence of the Major Nosocomial Pathogen Enterococcus faecium von Arredondo-Alonso, S, Top, J, McNally, A, Puranen, S, Pesonen, M, Pensar, J, Marttinen, P, Braat, J C, Rogers, M R C, van Schaik, W, Kaski, S, Willems, R J L, Corander, J, Schürch, A C

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