Deep generative neural network for accurate drug response imputation von Jia, Peilin, Hu, Ruifeng, Pei, Guangsheng, Dai, Yulin, Wang, Yin-Ying, Zhao, Zhongming

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Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives von Zhao, Min, Wang, Qingguo, Wang, Quan, Jia, Peilin, Zhao, Zhongming

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VarWalker: personalized mutation network analysis of putative cancer genes from next-generation sequencing data von Jia, Peilin, Zhao, Zhongming

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deTS: tissue-specific enrichment analysis to decode tissue specificity von Pei, Guangsheng, Dai, Yulin, Zhao, Zhongming, Jia, Peilin

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Gene2vec: distributed representation of genes based on co-expression von Du, Jingcheng, Jia, Peilin, Dai, Yulin, Tao, Cui, Zhao, Zhongming, Zhi, Degui

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6mA-Finder: a novel online tool for predicting DNA N6-methyladenine sites in genomes von Xu, Haodong, Hu, Ruifeng, Jia, Peilin, Zhao, Zhongming

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VirusFinder: software for efficient and accurate detection of viruses and their integration sites in host genomes through next generation sequencing data von Wang, Qingguo, Jia, Peilin, Zhao, Zhongming

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Cell-type deconvolution analysis identifies cancer-associated myofibroblast component as a poor prognostic factor in multiple cancer types von Li, Bingrui, Pei, Guangsheng, Yao, Jun, Ding, Qingqing, Jia, Peilin, Zhao, Zhongming

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Characterization of Tumor-Suppressor Gene Inactivation Events in 33 Cancer Types von Jia, Peilin, Zhao, Zhongming

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dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks von Jia, Peilin, Zheng, Siyuan, Long, Jirong, Zheng, Wei, Zhao, Zhongming

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Clonal architectures predict clinical outcome in clear cell renal cell carcinoma von Huang, Yi, Wang, Jiayin, Jia, Peilin, Li, Xiangchun, Pei, Guangsheng, Wang, Changxi, Fang, Xiaodong, Zhao, Zhongming, Cai, Zhiming, Yi, Xin, Wu, Song, Zhang, Baifeng

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scGWAS: landscape of trait-cell type associations by integrating single-cell transcriptomics-wide and genome-wide association studies von Jia, Peilin, Hu, Ruifeng, Yan, Fangfang, Dai, Yulin, Zhao, Zhongming

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Decoding whole-genome mutational signatures in 37 human pan-cancers by denoising sparse autoencoder neural network von Pei, Guangsheng, Hu, Ruifeng, Dai, Yulin, Zhao, Zhongming, Jia, Peilin

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Differential Expression of Viral Transcripts From Single-Cell RNA Sequencing of Moderate and Severe COVID-19 Patients and Its Implications for Case Severity von Liu, Teng, Jia, Peilin, Fang, Bingliang, Zhao, Zhongming

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Association of CXCR6 with COVID-19 severity: delineating the host genetic factors in transcriptomic regulation von Dai, Yulin, Wang, Junke, Jeong, Hyun-Hwan, Chen, Wenhao, Jia, Peilin, Zhao, Zhongming

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MicroRNA and transcription factor co-regulatory networks and subtype classification of seminoma and non-seminoma in testicular germ cell tumors von Qin, Guimin, Mallik, Saurav, Mitra, Ramkrishna, Li, Aimin, Jia, Peilin, Eischen, Christine M., Zhao, Zhongming

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TissGDB: tissue-specific gene database in cancer von Kim, Pora, Park, Aekyung, Han, Guangchun, Sun, Hua, Jia, Peilin, Zhao, Zhongming

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scRNASeqDB: A Database for RNA-Seq Based Gene Expression Profiles in Human Single Cells von Cao, Yuan, Zhu, Junjie, Jia, Peilin, Zhao, Zhongming

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Convergent genomic and pharmacological evidence of PI3K/GSK3 signaling alterations in neurons from schizophrenia patients von Stertz, Laura, Di Re, Jessica, Pei, Guangsheng, Fries, Gabriel R, Mendez, Emily, Li, Shenglan, Smith-Callahan, Laura, Raventos, Henriette, Tipo, Jerricho, Cherukuru, Rohan, Zhao, Zhongming, Liu, Ying, Jia, Peilin, Laezza, Fernanda, Walss-Bass, Consuelo

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Molecular signatures identified by integrating gene expression and methylation in non-seminoma and seminoma of testicular germ cell tumours von Mallik, Saurav, Qin, Guimin, Jia, Peilin, Zhao, Zhongming

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