Protein structure determination using metagenome sequence data von Ovchinnikov, Sergey, Park, Hahnbeom, Varghese, Neha, Huang, Po-Ssu, Pavlopoulos, Georgios A., Kim, David E., Kamisetty, Hetunandan, Kyrpides, Nikos C., Baker, David

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A Guide to Conquer the Biological Network Era Using Graph Theory von Koutrouli, Mikaela, Karatzas, Evangelos, Paez-Espino, David, Pavlopoulos, Georgios A

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1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life von Mukherjee, Supratim, Seshadri, Rekha, Varghese, Neha J, Eloe-Fadrosh, Emiley A, Meier-Kolthoff, Jan P, Göker, Markus, Coates, R Cameron, Hadjithomas, Michalis, Pavlopoulos, Georgios A, Paez-Espino, David, Yoshikuni, Yasuo, Visel, Axel, Whitman, William B, Garrity, George M, Eisen, Jonathan A, Hugenholtz, Philip, Pati, Amrita, Ivanova, Natalia N, Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos C

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NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes von Baltoumas, Fotis A, Karatzas, Evangelos, Liu, Sirui, Ovchinnikov, Sergey, Sofianatos, Yorgos, Chen, I-Min, Kyrpides, Nikos C, Pavlopoulos, Georgios A

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Metagenomics: Tools and Insights for Analyzing Next-Generation Sequencing Data Derived from Biodiversity Studies von Oulas, Anastasis, Pavloudi, Christina, Polymenakou, Paraskevi, Pavlopoulos, Georgios A., Papanikolaou, Nikolas, Kotoulas, Georgios, Arvanitidis, Christos, Iliopoulos, loannis

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ProteoSign v2: a faster and evolved user-friendly online tool for statistical analyses of differential proteomics von Theodorakis, Evangelos, Antonakis, Andreas N, Baltsavia, Ismini, Pavlopoulos, Georgios A, Samiotaki, Martina, Amoutzias, Grigoris D, Theodosiou, Theodosios, Acuto, Oreste, Efstathiou, Georgios, Iliopoulos, Ioannis

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Using graph theory to analyze biological networks von Pavlopoulos, Georgios A, Secrier, Maria, Moschopoulos, Charalampos N, Soldatos, Theodoros G, Kossida, Sophia, Aerts, Jan, Schneider, Reinhard, Bagos, Pantelis G

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VISTA Enhancer browser: an updated database of tissue-specific developmental enhancers von Kosicki, Michael, Baltoumas, Fotis A, Kelman, Guy, Boverhof, Joshua, Ong, Yeongshnn, Cook, Laura E, Dickel, Diane E, Pavlopoulos, Georgios A, Pennacchio, Len A, Visel, Axel

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NORMA: The Network Makeup Artist — A Web Tool for Network Annotation Visualization von Koutrouli, Mikaela, Karatzas, Evangelos, Papanikolopoulou, Katerina, Pavlopoulos, Georgios A.

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DrugQuest - a text mining workflow for drug association discovery von Papanikolaou, Nikolas, Pavlopoulos, Georgios A, Theodosiou, Theodosios, Vizirianakis, Ioannis S, Iliopoulos, Ioannis

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FLAME: A Web Tool for Functional and Literature Enrichment Analysis of Multiple Gene Lists von Thanati, Foteini, Karatzas, Evangelos, Baltoumas, Fotis A, Stravopodis, Dimitrios J, Eliopoulos, Aristides G, Pavlopoulos, Georgios A

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A Wireless Emergency Telemedicine System for Patients Monitoring and Diagnosis von Abo-Zahhad, M., Ahmed, Sabah M., Elnahas, O.

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A survey of k-mer methods and applications in bioinformatics von Moeckel, Camille, Mareboina, Manvita, Konnaris, Maxwell A., Chan, Candace S.Y., Mouratidis, Ioannis, Montgomery, Austin, Chantzi, Nikol, Pavlopoulos, Georgios A., Georgakopoulos-Soares, Ilias

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Diversity, evolution, and classification of virophages uncovered through global metagenomics von Paez-Espino, David, Zhou, Jinglie, Roux, Simon, Nayfach, Stephen, Pavlopoulos, Georgios A, Schulz, Frederik, McMahon, Katherine D, Walsh, David, Woyke, Tanja, Ivanova, Natalia N, Eloe-Fadrosh, Emiley A, Tringe, Susannah G, Kyrpides, Nikos C

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Arena3D: visualizing time-driven phenotypic differences in biological systems von Secrier, Maria, Pavlopoulos, Georgios A, Aerts, Jan, Schneider, Reinhard

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Empirical Comparison of Visualization Tools for Larger-Scale Network Analysis von Pavlopoulos, Georgios A., Paez-Espino, David, Kyrpides, Nikos C., Iliopoulos, Ioannis

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Protocol for unbiased, consolidated variant calling from whole exome sequencing data von Verrou, Kleio-Maria, Pavlopoulos, Georgios A., Moulos, Panagiotis

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Uncovering Earth’s virome von Paez-Espino, David, Eloe-Fadrosh, Emiley A., Pavlopoulos, Georgios A., Thomas, Alex D., Huntemann, Marcel, Mikhailova, Natalia, Rubin, Edward, Ivanova, Natalia N., Kyrpides, Nikos C.

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Blood Transcriptomes of Anti-SARS-CoV-2 Antibody-Positive Healthy Individuals Who Experienced Asymptomatic Versus Clinical Infection von Sfikakis, Petros P, Verrou, Kleio-Maria, Ampatziadis-Michailidis, Giannis, Tsitsilonis, Ourania, Paraskevis, Dimitrios, Kastritis, Efstathios, Lianidou, Evi, Moutsatsou, Paraskevi, Terpos, Evangelos, Trougakos, Ioannis, Chini, Vasiliki, Manoloukos, Menelaos, Moulos, Panagiotis, Pavlopoulos, Georgios A, Kollias, George, Hatzis, Pantelis, Dimopoulos, Meletios A

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PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types von Zafeiropoulos, Haris, Paragkamian, Savvas, Ninidakis, Stelios, Pavlopoulos, Georgios A, Jensen, Lars Juhl, Pafilis, Evangelos

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