Deep learning for computational biology von Angermueller, Christof, Pärnamaa, Tanel, Parts, Leopold, Stegle, Oliver

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Accurate Classification of Protein Subcellular Localization from High-Throughput Microscopy Images Using Deep Learning von Pärnamaa, Tanel, Parts, Leopold

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Agreement between two large pan-cancer CRISPR-Cas9 gene dependency data sets von Dempster, Joshua M., Pacini, Clare, Pantel, Sasha, Behan, Fiona M., Green, Thomas, Krill-Burger, John, Beaver, Charlotte M., Younger, Scott T., Zhivich, Victor, Najgebauer, Hanna, Allen, Felicity, Gonçalves, Emanuel, Shepherd, Rebecca, Doench, John G., Yusa, Kosuke, Vazquez, Francisca, Parts, Leopold, Boehm, Jesse S., Golub, Todd R., Hahn, William C., Root, David E., Garnett, Mathew J., Tsherniak, Aviad, Iorio, Francesco

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A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies von Stegle, Oliver, Parts, Leopold, Durbin, Richard, Winn, John

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Binding of ISRIB reveals a regulatory site in the nucleotide exchange factor eIF2B von Zyryanova, Alisa F, Weis, Félix, Faille, Alexandre, Alard, Akeel Abo, Crespillo-Casado, Ana, Sekine, Yusuke, Harding, Heather P, Allen, Felicity, Parts, Leopold, Fromont, Christophe, Fischer, Peter M, Warren, Alan J, Ron, David

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The ribosomal P-stalk couples amino acid starvation to GCN2 activation in mammalian cells von Harding, Heather P, Ordonez, Adriana, Allen, Felicity, Parts, Leopold, Inglis, Alison J, Williams, Roger L, Ron, David

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Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data von Moradigaravand, Danesh, Palm, Martin, Farewell, Anne, Mustonen, Ville, Warringer, Jonas, Parts, Leopold

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Predicting the mutations generated by repair of Cas9-induced double-strand breaks von Allen, Felicity, Crepaldi, Luca, Alsinet, Clara, Strong, Alexander J., Kleshchevnikov, Vitalii, De Angeli, Pietro, Páleníková, Petra, Khodak, Anton, Kiselev, Vladimir, Kosicki, Michael, Bassett, Andrew R., Harding, Heather, Galanty, Yaron, Muñoz-Martínez, Francisco, Metzakopian, Emmanouil, Jackson, Stephen P., Parts, Leopold

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Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes von Bushell, Ellen, Gomes, Ana Rita, Sanderson, Theo, Anar, Burcu, Girling, Gareth, Herd, Colin, Metcalf, Tom, Modrzynska, Katarzyna, Schwach, Frank, Martin, Rowena E., Mather, Michael W., McFadden, Geoffrey I., Parts, Leopold, Rutledge, Gavin G., Vaidya, Akhil B., Wengelnik, Kai, Rayner, Julian C., Billker, Oliver

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gitter: A Robust and Accurate Method for Quantification of Colony Sizes From Plate Images von Wagih, Omar, Parts, Leopold

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JACKS: joint analysis of CRISPR/Cas9 knockout screens von Allen, Felicity, Behan, Fiona, Khodak, Anton, Iorio, Francesco, Yusa, Kosuke, Garnett, Mathew, Parts, Leopold

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Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design von Smith, Justin D, Suresh, Sundari, Schlecht, Ulrich, Wu, Manhong, Wagih, Omar, Peltz, Gary, Davis, Ronald W, Steinmetz, Lars M, Parts, Leopold, St Onge, Robert P

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A high-definition view of functional genetic variation from natural yeast genomes von Bergström, Anders, Simpson, Jared T, Salinas, Francisco, Barré, Benjamin, Parts, Leopold, Zia, Amin, Nguyen Ba, Alex N, Moses, Alan M, Louis, Edward J, Mustonen, Ville, Warringer, Jonas, Durbin, Richard, Liti, Gianni

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Minimal genome-wide human CRISPR-Cas9 library von Gonçalves, Emanuel, Thomas, Mark, Behan, Fiona M, Picco, Gabriele, Pacini, Clare, Allen, Felicity, Vinceti, Alessandro, Sharma, Mamta, Jackson, David A, Price, Stacey, Beaver, Charlotte M, Dovey, Oliver, Parry-Smith, David, Iorio, Francesco, Parts, Leopold, Yusa, Kosuke, Garnett, Mathew J

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Patterns of cis regulatory variation in diverse human populations von Stranger, Barbara E, Montgomery, Stephen B, Dimas, Antigone S, Parts, Leopold, Stegle, Oliver, Ingle, Catherine E, Sekowska, Magda, Smith, George Davey, Evans, David, Gutierrez-Arcelus, Maria, Price, Alkes, Raj, Towfique, Nisbett, James, Nica, Alexandra C, Beazley, Claude, Durbin, Richard, Deloukas, Panos, Dermitzakis, Emmanouil T

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Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants von Langridge, Gemma C, Phan, Minh-Duy, Turner, Daniel J, Perkins, Timothy T, Parts, Leopold, Haase, Jana, Charles, Ian, Maskell, Duncan J, Peters, Sarah E, Dougan, Gordon, Wain, John, Parkhill, Julian, Turner, A Keith

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Revealing the genetic structure of a trait by sequencing a population under selection von Parts, Leopold, Cubillos, Francisco A, Warringer, Jonas, Jain, Kanika, Salinas, Francisco, Bumpstead, Suzannah J, Molin, Mikael, Zia, Amin, Simpson, Jared T, Quail, Michael A, Moses, Alan, Louis, Edward J, Durbin, Richard, Liti, Gianni

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SGAtools: one-stop analysis and visualization of array-based genetic interaction screens von Wagih, Omar, Usaj, Matej, Baryshnikova, Anastasia, VanderSluis, Benjamin, Kuzmin, Elena, Costanzo, Michael, Myers, Chad L, Andrews, Brenda J, Boone, Charles M, Parts, Leopold

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Population genomics of domestic and wild yeasts von Liti, Gianni, Carter, David M, Moses, Alan M, Warringer, Jonas, Parts, Leopold, James, Stephen A, Davey, Robert P, Roberts, Ian N, Burt, Austin, Koufopanou, Vassiliki, Tsai, Isheng J, Bergman, Casey M, Benasson, Douda, O'Kelly, Michael J.T, Van Oudenaarden, Alexander

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The miRNA profile of human pancreatic islets and beta-cells and relationship to type 2 diabetes pathogenesis von van de Bunt, Martijn, Gaulton, Kyle J, Parts, Leopold, Moran, Ignasi, Johnson, Paul R, Lindgren, Cecilia M, Ferrer, Jorge, Gloyn, Anna L, McCarthy, Mark I

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