Meta-Analysis of BRCA1 and BRCA2 Penetrance von Chen, Sining, Parmigiani, Giovanni

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ComBat-seq: batch effect adjustment for RNA-seq count data von Zhang, Yuqing, Parmigiani, Giovanni, Johnson, W Evan

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I-SPY 2 — A Glimpse of the Future of Phase 2 Drug Development? von Harrington, David, Parmigiani, Giovanni

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Half or more of the somatic mutations in cancers of self-renewing tissues originate prior to tumor initiation von Tomasetti, Cristian, Vogelstein, Bert, Parmigiani, Giovanni

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Only three driver gene mutations are required for the development of lung and colorectal cancers von Tomasett, Cristiani, Marchionni, Luigi, Nowak, Martin A., Parmigiani, Giovanni, Vogelstein, Bert

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Pathologic Complete Response after Neoadjuvant Chemotherapy and Impact on Breast Cancer Recurrence and Survival: A Comprehensive Meta-analysis von Spring, Laura M, Fell, Geoffrey, Arfe, Andrea, Sharma, Chandni, Greenup, Rachel, Reynolds, Kerry L, Smith, Barbara L, Alexander, Brian, Moy, Beverly, Isakoff, Steven J, Parmigiani, Giovanni, Trippa, Lorenzo, Bardia, Aditya

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Familial Risk and Heritability of Cancer Among Twins in Nordic Countries von Mucci, Lorelei A, Hjelmborg, Jacob B, Harris, Jennifer R, Czene, Kamila, Havelick, David J, Scheike, Thomas, Graff, Rebecca E, Holst, Klaus, Möller, Sören, Unger, Robert H, McIntosh, Christina, Nuttall, Elizabeth, Brandt, Ingunn, Penney, Kathryn L, Hartman, Mikael, Kraft, Peter, Parmigiani, Giovanni, Christensen, Kaare, Koskenvuo, Markku, Holm, Niels V, Heikkilä, Kauko, Pukkala, Eero, Skytthe, Axel, Adami, Hans-Olov, Kaprio, Jaakko

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Consensus on Molecular Subtypes of High-Grade Serous Ovarian Carcinoma von Chen, Gregory M, Kannan, Lavanya, Geistlinger, Ludwig, Kofia, Victor, Safikhani, Zhaleh, Gendoo, Deena M A, Parmigiani, Giovanni, Birrer, Michael, Haibe-Kains, Benjamin, Waldron, Levi

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BRCA1 Recruitment to Transcriptional Pause Sites Is Required for R-Loop-Driven DNA Damage Repair von Hatchi, Elodie, Skourti-Stathaki, Konstantina, Ventz, Steffen, Pinello, Luca, Yen, Angela, Kamieniarz-Gdula, Kinga, Dimitrov, Stoil, Pathania, Shailja, McKinney, Kristine M., Eaton, Matthew L., Kellis, Manolis, Hill, Sarah J., Parmigiani, Giovanni, Proudfoot, Nicholas J., Livingston, David M.

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Decision Theory: Principles and Approaches von Parmigiani, Giovanni, Inoue, Lurdes

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Cross-study validation for the assessment of prediction algorithms von Bernau, Christoph, Riester, Markus, Boulesteix, Anne-Laure, Parmigiani, Giovanni, Huttenhower, Curtis, Waldron, Levi, Trippa, Lorenzo

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Integrated Genomic Analysis of Human Glioblastoma Multiforme von Parsons, D. Williams, Jones, Siân, Zhang, Xiaosong, Lin, Jimmy Cheng-Ho, Leary, Rebecca J, Angenendt, Philipp, Mankoo, Parminder, Carter, Hannah, Siu, I. Mei, Gallia, Gary L, Olivi, Alessandro, McLendon, Roger, Rasheed, B. Ahmed, Keir, Stephen, Nikolskaya, Tatiana, Nikolsky, Yuri, Busam, Dana A, Tekleab, Hanna, Diaz, Luis A. Jr, Hartigan, James, Smith, Doug R, Strausberg, Robert L, Marie, Suely Kazue Nagahashi, Shinjo, Sueli Mieko Oba, Yan, Hai, Riggins, Gregory J, Bigner, Darell D, Karchin, Rachel, Papadopoulos, Nick, Parmigiani, Giovanni, Vogelstein, Bert, Velculescu, Victor E, Kinzler, Kenneth W

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Bayesian Response-Adaptive Designs for Basket Trials von Ventz, Steffen, Barry, William T., Parmigiani, Giovanni, Trippa, Lorenzo

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Comparative lesion sequencing provides insights into tumor evolution von Jones, Siân, Chen, Wei-dong, Parmigiani, Giovanni, Diehl, Frank, Beerenwinkel, Niko, Antal, Tibor, Traulsen, Arne, Nowak, Martin A, Siegel, Christopher, Velculescu, Victor E, Kinzler, Kenneth W, Vogelstein, Bert, Willis, Joseph, Markowitz, Sanford D

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Genome-Wide Somatic Alterations in Multiple Myeloma Reveal a Superior Outcome Group von Samur, Mehmet Kemal, Aktas Samur, Anil, Fulciniti, Mariateresa, Szalat, Raphael, Han, Tessa, Shammas, Masood, Richardson, Paul, Magrangeas, Florence, Minvielle, Stephane, Corre, Jill, Moreau, Philippe, Thakurta, Anjan, Anderson, Kenneth C, Parmigiani, Giovanni, Avet-Loiseau, Hervé, Munshi, Nikhil C

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Estimation of sequencing error rates in short reads von Wang, Xin Victoria, Blades, Natalie, Ding, Jie, Sultana, Razvan, Parmigiani, Giovanni

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Defining Replicability of Prediction Rules von Parmigiani, Giovanni

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Loss of ribonuclease DIS3 hampers genome integrity in myeloma by disrupting DNA:RNA hybrid metabolism von Gritti, Ilaria, Basso, Veronica, Rinchai, Darawan, Corigliano, Federica, Pivetti, Silvia, Gaviraghi, Marco, Rosano, Dalia, Mazza, Davide, Barozzi, Sara, Roncador, Marco, Parmigiani, Giovanni, Legube, Gaelle, Parazzoli, Dario, Cittaro, Davide, Bedognetti, Davide, Mondino, Anna, Segalla, Simona, Tonon, Giovanni

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Bone marrow stromal cells induce chromatin remodeling in multiple myeloma cells leading to transcriptional changes von Binder, Moritz, Szalat, Raphael E., Talluri, Srikanth, Fulciniti, Mariateresa, Avet-Loiseau, Hervé, Parmigiani, Giovanni, Samur, Mehmet K., Munshi, Nikhil C.

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Stromal and epithelial transcriptional map of initiation progression and metastatic potential of human prostate cancer von Tyekucheva, Svitlana, Bowden, Michaela, Bango, Clyde, Giunchi, Francesca, Huang, Ying, Zhou, Chensheng, Bondi, Arrigo, Lis, Rosina, Van Hemelrijck, Mieke, Andrén, Ove, Andersson, Sven-Olof, Watson, R. William, Pennington, Stephen, Finn, Stephen P., Martin, Neil E., Stampfer, Meir J., Parmigiani, Giovanni, Penney, Kathryn L., Fiorentino, Michelangelo, Mucci, Lorelei A., Loda, Massimo

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