Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance von Rosshart, Stephan P., Vassallo, Brian G., Angeletti, Davide, Hutchinson, Diane S., Morgan, Andrew P., Takeda, Kazuyo, Hickman, Heather D., McCulloch, John A., Badger, Jonathan H., Ajami, Nadim J., Trinchieri, Giorgio, Pardo-Manuel de Villena, Fernando, Yewdell, Jonathan W., Rehermann, Barbara

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C57BL/6N Mutation in Cytoplasmic FMRP interacting protein 2 Regulates Cocaine Response von Kumar, Vivek, Kim, Kyungin, Joseph, Chryshanthi, Kourrich, Saïd, Yoo, Seung-Hee, Huang, Hung Chung, Vitaterna, Martha H., de Villena, Fernando Pardo-Manuel, Churchill, Gary, Bonci, Antonello, Takahashi, Joseph S.

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eQTL mapping using allele-specific count data is computationally feasible, powerful, and provides individual-specific estimates of genetic effects von Zhabotynsky, Vasyl, Huang, Licai, Little, Paul, Hu, Yi-Juan, Pardo-Manuel de Villena, Fernando, Zou, Fei, Sun, Wei

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Host genetic diversity enables Ebola hemorrhagic fever pathogenesis and resistance von Rasmussen, Angela L., Okumura, Atsushi, Ferris, Martin T., Green, Richard, Feldmann, Friederike, Kelly, Sara M., Scott, Dana P., Safronetz, David, Haddock, Elaine, LaCasse, Rachel, Thomas, Matthew J., Sova, Pavel, Carter, Victoria S., Weiss, Jeffrey M., Miller, Darla R., Shaw, Ginger D., Korth, Marcus J., Heise, Mark T., Baric, Ralph S., de Villena, Fernando Pardo-Manuel, Feldmann, Heinz, Katze, Michael G.

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Genomes of the Mouse Collaborative Cross von Srivastava, Anuj, Morgan, Andrew P, Najarian, Maya L, Sarsani, Vishal Kumar, Sigmon, J Sebastian, Shorter, John R, Kashfeen, Anwica, McMullan, Rachel C, Williams, Lucy H, Giusti-Rodríguez, Paola, Ferris, Martin T, Sullivan, Patrick, Hock, Pablo, Miller, Darla R, Bell, Timothy A, McMillan, Leonard, Churchill, Gary A, de Villena, Fernando Pardo-Manuel

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Sequence and Structural Diversity of Mouse Y Chromosomes von Morgan, Andrew P, Pardo-Manuel de Villena, Fernando

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The evolutionary significance of meiotic drive von Searle, Jeremy B, de Villena, Fernando Pardo-Manuel

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Genetic diversity drives extreme responses to traumatic brain injury and post-traumatic epilepsy von Shannon, Tyler, Cotter, Christopher, Fitzgerald, Julie, Houle, Samuel, Levine, Noah, Shen, Yuyan, Rajjoub, Noora, Dobres, Shannon, Iyer, Sidharth, Xenakis, James, Lynch, Rachel, de Villena, Fernando Pardo-Manuel, Kokiko-Cochran, Olga, Gu, Bin

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Differential metabolism of inorganic arsenic in mice from genetically diverse Collaborative Cross strains von Stýblo, Miroslav, Douillet, Christelle, Bangma, Jacqueline, Eaves, Lauren A., de Villena, Fernando Pardo-Manuel, Fry, Rebecca

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Host-pathogen genetic interactions underlie tuberculosis susceptibility in genetically diverse mice von Smith, Clare M, Baker, Richard E, Proulx, Megan K, Mishra, Bibhuti B, Long, Jarukit E, Park, Sae Woong, Lee, Ha-Na, Kiritsy, Michael C, Bellerose, Michelle M, Olive, Andrew J, Murphy, Kenan C, Papavinasasundaram, Kadamba, Boehm, Frederick J, Reames, Charlotte J, Meade, Rachel K, Hampton, Brea K, Linnertz, Colton L, Shaw, Ginger D, Hock, Pablo, Bell, Timothy A, Ehrt, Sabine, Schnappinger, Dirk, Pardo-Manuel de Villena, Fernando, Ferris, Martin T, Ioerger, Thomas R, Sassetti, Christopher M

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High-resolution sex-specific linkage maps of the mouse reveal polarized distribution of crossovers in male germline von Liu, Eric Yi, Morgan, Andrew P, Chesler, Elissa J, Wang, Wei, Churchill, Gary A, Pardo-Manuel de Villena, Fernando

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Quantitative trait mapping in Diversity Outbred mice identifies two genomic regions associated with heart size von Shorter, John R., Huang, Wei, Beak, Ju Youn, Hua, Kunjie, Gatti, Daniel M., de Villena, Fernando Pardo-Manuel, Pomp, Daniel, Jensen, Brian C.

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Male Infertility Is Responsible for Nearly Half of the Extinction Observed in the Mouse Collaborative Cross von Shorter, John R, Odet, Fanny, Aylor, David L, Pan, Wenqi, Kao, Chia-Yu, Fu, Chen-Ping, Morgan, Andrew P, Greenstein, Seth, Bell, Timothy A, Stevans, Alicia M, Feathers, Ryan W, Patel, Sunny, Cates, Sarah E, Shaw, Ginger D, Miller, Darla R, Chesler, Elissa J, McMillian, Leonard, O'Brien, Deborah A, Villena, Fernando Pardo-Manuel de

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Characterization of genetically complex Collaborative Cross mouse strains that model divergent locomotor activating and reinforcing properties of cocaine von Schoenrock, Sarah A., Kumar, Padam, Gómez-A, Alexander, Dickson, Price E., Kim, Sam-Moon, Bailey, Lauren, Neira, Sofia, Riker, Kyle D., Farrington, Joseph, Gaines, Christiann H., Khan, Saad, Wilcox, Troy D., Roy, Tyler A., Leonardo, Michael R., Olson, Ashley A., Gagnon, Leona H., Philip, Vivek M., Valdar, William, de Villena, Fernando Pardo-Manuel, Jentsch, James D., Logan, Ryan W., McClung, Colleen A., Robinson, Donita L., Chesler, Elissa J., Tarantino, Lisa M.

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A customized and versatile high-density genotyping array for the mouse von de Villena, Fernando Pardo-Manuel, Churchill, Gary A, Yang, Hyuna, Ding, Yueming, Hutchins, Lucie N, Szatkiewicz, Jin, Bell, Timothy A, Paigen, Beverly J, Graber, Joel H

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On the subspecific origin of the laboratory mouse von Pardo-Manuel de Villena, Fernando, Yang, Hyuna, Bell, Timothy A, Churchill, Gary A

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Functionally Overlapping Variants Control Tuberculosis Susceptibility in Collaborative Cross Mice von Smith, Clare M, Proulx, Megan K, Lai, Rocky, Kiritsy, Michael C, Bell, Timothy A, Hock, Pablo, Pardo-Manuel de Villena, Fernando, Ferris, Martin T, Baker, Richard E, Behar, Samuel M, Sassetti, Christopher M

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Genome Wide Identification of SARS-CoV Susceptibility Loci Using the Collaborative Cross von Gralinski, Lisa E, Ferris, Martin T, Aylor, David L, Whitmore, Alan C, Green, Richard, Frieman, Matthew B, Deming, Damon, Menachery, Vineet D, Miller, Darla R, Buus, Ryan J, Bell, Timothy A, Churchill, Gary A, Threadgill, David W, Katze, Michael G, McMillan, Leonard, Valdar, William, Heise, Mark T, Pardo-Manuel de Villena, Fernando, Baric, Ralph S

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Genetic diversity between mouse strains allows identification of the CC027/GeniUnc strain as an orally reactive model of peanut allergy von Orgel, Kelly, Smeekens, Johanna M., Ye, Ping, Fotsch, Lauren, Guo, Rishu, Miller, Darla R., Pardo-Manuel de Villena, Fernando, Burks, A. Wesley, Ferris, Martin T., Kulis, Michael D.

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Multi-omics analysis identifies drivers of protein phosphorylation von Zhang, Tian, Keele, Gregory R, Gyuricza, Isabela Gerdes, Vincent, Matthew, Brunton, Catherine, Bell, Timothy A, Hock, Pablo, Shaw, Ginger D, Munger, Steven C, de Villena, Fernando Pardo-Manuel, Ferris, Martin T, Paulo, Joao A, Gygi, Steven P, Churchill, Gary A

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