Factor B, the complement alternative pathway serine proteinase, is a major constitutive protein synthesized and secreted by resident and elicited mouse macrophages von SUNDSMO, J. S, CHIN, J. R, PAPIN, R. A, FAIR, D. S, WERB, Z

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Complement activation in Type 1 human diabetes von Sundsmo, John S., Papin, Ruth A., Wood, Lorraine, Hirani, Shirish, Waldeck, Nancy, Buckingham, Bruce, Kershnar, Ann, Ascher, Mike, Charles, M.Arthur

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Leukocyte complement: Interleukin-like properties of Factor Bb von Hirani, Shirish, Fair, Daryl S., Papin, Ruth A., Sundsmo, John S.

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Using the concordance of in vitro and in vivo data to evaluate extrapolation assumptions von Honda, Gregory S, Pearce, Robert G, Pham, Ly L, Setzer, R W, Wetmore, Barbara A, Sipes, Nisha S, Gilbert, Jon, Franz, Briana, Thomas, Russell S, Wambaugh, John F

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Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production von Colijn, Caroline, Brandes, Aaron, Zucker, Jeremy, Lun, Desmond S, Weiner, Brian, Farhat, Maha R, Cheng, Tan-Yun, Moody, D Branch, Murray, Megan, Galagan, James E

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Atomic and nanoscale chemical and structural changes in quenched and tempered 4340 steel von Clarke, A.J., Miller, M.K., Field, R.D., Coughlin, D.R., Gibbs, P.J., Clarke, K.D., Alexander, D.J., Powers, K.A., Papin, P.A., Krauss, G.

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CTD: An information-theoretic algorithm to interpret sets of metabolomic and transcriptomic perturbations in the context of graphical models von Thistlethwaite, Lillian R, Petrosyan, Varduhi, Li, Xiqi, Miller, Marcus J, Elsea, Sarah H, Milosavljevic, Aleksandar

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Structural adaptation and heterogeneity of normal and tumor microvascular networks von Pries, Axel R, Cornelissen, Annemiek J M, Sloot, Anoek A, Hinkeldey, Marlene, Dreher, Matthew R, Höpfner, Michael, Dewhirst, Mark W, Secomb, Timothy W

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scAmpi-A versatile pipeline for single-cell RNA-seq analysis from basics to clinics von Bertolini, Anne, Prummer, Michael, Tuncel, Mustafa Anil, Menzel, Ulrike, Rosano-González, María Lourdes, Kuipers, Jack, Stekhoven, Daniel Johannes, Beerenwinkel, Niko, Singer, Franziska

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Population FBA predicts metabolic phenotypes in yeast von Labhsetwar, Piyush, Melo, Marcelo C R, Cole, John A, Luthey-Schulten, Zaida

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Matrix rigidity regulates cancer cell growth by modulating cellular metabolism and protein synthesis von Tilghman, Robert W, Blais, Edik M, Cowan, Catharine R, Sherman, Nicholas E, Grigera, Pablo R, Jeffery, Erin D, Fox, Jay W, Blackman, Brett R, Tschumperlin, Daniel J, Papin, Jason A, Parsons, J Thomas

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Impact of stoichiometry representation on simulation of genotype-phenotype relationships in metabolic networks von Brochado, Ana Rita, Andrejev, Sergej, Maranas, Costas D, Patil, Kiran R

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Protein- and zinc-deficient diets modulate the murine microbiome and metabolic phenotype von Mayneris-Perxachs, Jordi, Bolick, David T, Leng, Joy, Medlock, Greg L, Kolling, Glynis L, Papin, Jason A, Swann, Jonathan R, Guerrant, Richard L

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Niche-specific metabolic phenotypes can be used to identify antimicrobial targets in pathogens von Glass, Emma M, Dillard, Lillian R, Kolling, Glynis L, Warren, Andrew S, Papin, Jason A

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High mitochondrial diversity of domesticated goats persisted among Bronze and Iron Age pastoralists in the Inner Asian Mountain Corridor von Hermes, Taylor R, Frachetti, Michael D, Voyakin, Dmitriy, Yerlomaeva, Antonina S, Beisenov, Arman Z, Doumani Dupuy, Paula N, Papin, Dmitry V, Motuzaite Matuzeviciute, Giedre, Bayarsaikhan, Jamsranjav, Houle, Jean-Luc, Tishkin, Alexey A, Nebel, Almut, Krause-Kyora, Ben, Makarewicz, Cheryl A

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Dynamic modelling under uncertainty: the case of Trypanosoma brucei energy metabolism von Achcar, Fiona, Kerkhoven, Eduard J, Bakker, Barbara M, Barrett, Michael P, Breitling, Rainer

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Enterococci enhance Clostridioides difficile pathogenesis von Smith, Alexander B., Jenior, Matthew L., Keenan, Orlaith, Hart, Jessica L., Specker, Jonathan, Abbas, Arwa, Rangel, Paula C., Di, Chao, Green, Jamal, Bustin, Katelyn A., Gaddy, Jennifer A., Nicholson, Maribeth R., Laut, Clare, Kelly, Brendan J., Matthews, Megan L., Evans, Daniel R., Van Tyne, Daria, Furth, Emma E., Papin, Jason A., Bushman, Frederic D., Erlichman, Jessi, Baldassano, Robert N., Silverman, Michael A., Dunny, Gary M., Prentice, Boone M., Skaar, Eric P., Zackular, Joseph P.

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MEMOTE for standardized genome-scale metabolic model testing von Lieven, Christian, Beber, Moritz E., Olivier, Brett G., Bergmann, Frank T., Ataman, Meric, Babaei, Parizad, Bartell, Jennifer A., Blank, Lars M., Chauhan, Siddharth, Correia, Kevin, Diener, Christian, Dräger, Andreas, Ebert, Birgitta E., Edirisinghe, Janaka N., Faria, José P., Feist, Adam M., Fengos, Georgios, Fleming, Ronan M. T., García-Jiménez, Beatriz, Hatzimanikatis, Vassily, van Helvoirt, Wout, Henry, Christopher S., Hermjakob, Henning, Herrgård, Markus J., Kaafarani, Ali, Kim, Hyun Uk, King, Zachary, Klamt, Steffen, Klipp, Edda, Koehorst, Jasper J., König, Matthias, Lakshmanan, Meiyappan, Lee, Dong-Yup, Lee, Sang Yup, Lee, Sunjae, Lewis, Nathan E., Liu, Filipe, Ma, Hongwu, Machado, Daniel, Mahadevan, Radhakrishnan, Maia, Paulo, Mardinoglu, Adil, Medlock, Gregory L., Monk, Jonathan M., Nielsen, Jens, Nielsen, Lars Keld, Nogales, Juan, Nookaew, Intawat, Palsson, Bernhard O., Papin, Jason A., Patil, Kiran R., Poolman, Mark, Price, Nathan D., Resendis-Antonio, Osbaldo, Richelle, Anne, Rocha, Isabel, Sánchez, Benjamín J., Schaap, Peter J., Malik Sheriff, Rahuman S., Shoaie, Saeed, Sonnenschein, Nikolaus, Teusink, Bas, Vilaça, Paulo, Vik, Jon Olav, Wodke, Judith A. H., Xavier, Joana C., Yuan, Qianqian, Zakhartsev, Maksim, Zhang, Cheng

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The NASA Exoplanet Archive: Data and Tools for Exoplanet Research von Akeson, R. L., Chen, X., Ciardi, D., Crane, M., Good, J., Harbut, M., Jackson, E., Kane, S. R., Laity, A. C., Leifer, S., Lynn, M., McElroy, D. L., Papin, M., Plavchan, P., Ramírez, S. V., Rey, R., von Braun, K., Wittman, M., Abajian, M., Ali, B., Beichman, C., Beekley, A., Berriman, G. B., Berukoff, S., Bryden, G., Chan, B., Groom, S., Lau, C., Payne, A. N., Regelson, M., Saucedo, M., Schmitz, M., Stauffer, J., Wyatt, P., Zhang, A.

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New perspectives into the vaginal microbiome with systems biology von Lee, Christina Y., Dillard, Lillian R., Papin, Jason A., Arnold, Kelly B.

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