Spatial immunoprofiling of the intratumoral and peritumoral tissue of renal cell carcinoma patients von Brück, Oscar, Lee, Moon Hee, Turkki, Riku, Uski, Ilona, Penttilä, Patrick, Paavolainen, Lassi, Kovanen, Panu, Järvinen, Petrus, Bono, Petri, Pellinen, Teijo, Mustjoki, Satu, Kreutzman, Anna

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Association of tamoxifen resistance and lipid reprogramming in breast cancer von Hultsch, Susanne, Kankainen, Matti, Paavolainen, Lassi, Kovanen, Ruusu-Maaria, Ikonen, Elina, Kangaspeska, Sara, Pietiäinen, Vilja, Kallioniemi, Olli

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A functional genetic screen defines the AKT-induced senescence signaling network von Chan, Keefe T., Blake, Shaun, Zhu, Haoran, Kang, Jian, Trigos, Anna S., Madhamshettiwar, Piyush B., Diesch, Jeannine, Paavolainen, Lassi, Horvath, Peter, Hannan, Ross D., George, Amee J., Sanij, Elaine, Hannan, Katherine M., Simpson, Kaylene J., Pearson, Richard B.

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Regression plane concept for analysing continuous cellular processes with machine learning von Szkalisity, Abel, Piccinini, Filippo, Beleon, Attila, Balassa, Tamas, Varga, Istvan Gergely, Migh, Ede, Molnar, Csaba, Paavolainen, Lassi, Timonen, Sanna, Banerjee, Indranil, Ikonen, Elina, Yamauchi, Yohei, Ando, Istvan, Peltonen, Jaakko, Pietiäinen, Vilja, Honti, Viktor, Horvath, Peter

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Intelligent image-based in situ single-cell isolation von Brasko, Csilla, Smith, Kevin, Molnar, Csaba, Farago, Nora, Hegedus, Lili, Balind, Arpad, Balassa, Tamas, Szkalisity, Abel, Sukosd, Farkas, Kocsis, Katalin, Balint, Balazs, Paavolainen, Lassi, Enyedi, Marton Z., Nagy, Istvan, Puskas, Laszlo G., Haracska, Lajos, Tamas, Gabor, Horvath, Peter

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UNC-45a promotes myosin folding and stress fiber assembly von Lehtimäki, Jaakko I, Fenix, Aidan M, Kotila, Tommi M, Balistreri, Giuseppe, Paavolainen, Lassi, Varjosalo, Markku, Burnette, Dylan T, Lappalainen, Pekka

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Compensation of missing wedge effects with sequential statistical reconstruction in electron tomography von Paavolainen, Lassi, Acar, Erman, Tuna, Uygar, Peltonen, Sari, Moriya, Toshio, Soonsawad, Pan, Marjomäki, Varpu, Cheng, R Holland, Ruotsalainen, Ulla

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Prognostic Role of Tumor Immune Microenvironment in Pleural Epithelioid Mesothelioma von Ollila, Hely, Mäyränpää, Mikko I., Paavolainen, Lassi, Paajanen, Juuso, Välimäki, Katja, Sutinen, Eva, Wolff, Henrik, Räsänen, Jari, Kallioniemi, Olli, Myllärniemi, Marjukka, Ilonen, Ilkka, Pellinen, Teijo

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Comparison of two supporting matrices for patient-derived cancer cells in 3D drug sensitivity and resistance testing assay (3D-DSRT) von Feodoroff, Michaela, Mikkonen, Piia, Turunen, Laura, Hassinen, Antti, Paasonen, Lauri, Paavolainen, Lassi, Potdar, Swapnil, Murumägi, Astrid, Kallioniemi, Olli, Pietiäinen, Vilja

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BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows von Rubens, Ulysse, Mormont, Romain, Paavolainen, Lassi, Bäcker, Volker, Pavie, Benjamin, Scholz, Leandro A., Michiels, Gino, Maška, Martin, Ünay, Devrim, Ball, Graeme, Hoyoux, Renaud, Vandaele, Rémy, Golani, Ofra, Stanciu, Stefan G., Sladoje, Natasa, Paul-Gilloteaux, Perrine, Marée, Raphaël, Tosi, Sébastien

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Phosphorylation of PACSIN2 at S313 Regulates Podocyte Architecture in Coordination with N-WASP von Bouslama, Rim, Dumont, Vincent, Lindfors, Sonja, Paavolainen, Lassi, Tienari, Jukka, Nisen, Harry, Mirtti, Tuomas, Saleem, Moin A, Gordin, Daniel, Groop, Per-Henrik, Suetsugu, Shiro, Lehtonen, Sanna

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Quantitative analysis of dynamic association in live biological fluorescent samples von Ruusuvuori, Pekka, Paavolainen, Lassi, Rutanen, Kalle, Mäki, Anita, Huttunen, Heikki, Marjomäki, Varpu

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Calpains promote α2β1 integrin turnover in nonrecycling integrin pathway von Rintanen, Nina, Karjalainen, Mikko, Alanko, Jonna, Paavolainen, Lassi, Mäki, Anita, Nissinen, Liisa, Lehkonen, Moona, Kallio, Katri, Cheng, R Holland, Upla, Paula, Ivaska, Johanna, Marjomäki, Varpu

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Permeability changes of integrin-containing multivesicular structures triggered by picornavirus entry von Soonsawad, Pan, Paavolainen, Lassi, Upla, Paula, Weerachatyanukul, Wattana, Rintanen, Nina, Espinoza, Juan, McNerney, Gregory, Marjomäki, Varpu, Cheng, R Holland

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Nucleus segmentation: towards automated solutions von Hollandi, Reka, Moshkov, Nikita, Paavolainen, Lassi, Tasnadi, Ervin, Piccinini, Filippo, Horvath, Peter

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Data-analysis strategies for image-based cell profiling von Caicedo, Juan C, Cooper, Sam, Heigwer, Florian, Warchal, Scott, Qiu, Peng, Molnar, Csaba, Vasilevich, Aliaksei S, Barry, Joseph D, Bansal, Harmanjit Singh, Kraus, Oren, Wawer, Mathias, Paavolainen, Lassi, Herrmann, Markus D, Rohban, Mohammad, Hung, Jane, Hennig, Holger, Concannon, John, Smith, Ian, Clemons, Paul A, Singh, Shantanu, Rees, Paul, Horvath, Peter, Linington, Roger G, Carpenter, Anne E

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Artificial intelligence aided serum protein electrophoresis analysis of Finnish patient samples: Retrospective validation von Lahtiharju, Tapio, Paavolainen, Lassi, Suvisaari, Janne, Nokelainen, Pasi, Rotgers, Emmi, Anttonen, Mikko, Itkonen, Outi

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Systems pathology by multiplexed immunohistochemistry and whole-slide digital image analysis von Blom, Sami, Paavolainen, Lassi, Bychkov, Dmitrii, Turkki, Riku, Mäki-Teeri, Petra, Hemmes, Annabrita, Välimäki, Katja, Lundin, Johan, Kallioniemi, Olli, Pellinen, Teijo

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Fibroblast subsets in non-small cell lung cancer: Associations with survival, mutations, and immune features von Pellinen, Teijo, Paavolainen, Lassi, Martín-Bernabé, Alfonso, Papatella Araujo, Renata, Strell, Carina, Mezheyeuski, Artur, Backman, Max, La Fleur, Linnea, Brück, Oscar, Sjölund, Jonas, Holmberg, Erik, Välimäki, Katja, Brunnström, Hans, Botling, Johan, Moreno-Ruiz, Pablo, Kallioniemi, Olli, Micke, Patrick, Östman, Arne

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nucleAIzer: A Parameter-free Deep Learning Framework for Nucleus Segmentation Using Image Style Transfer von Hollandi, Reka, Szkalisity, Abel, Toth, Timea, Tasnadi, Ervin, Molnar, Csaba, Mathe, Botond, Grexa, Istvan, Molnar, Jozsef, Balind, Arpad, Gorbe, Mate, Kovacs, Maria, Migh, Ede, Goodman, Allen, Balassa, Tamas, Koos, Krisztian, Wang, Wenyu, Caicedo, Juan Carlos, Bara, Norbert, Kovacs, Ferenc, Paavolainen, Lassi, Danka, Tivadar, Kriston, Andras, Carpenter, Anne Elizabeth, Smith, Kevin, Horvath, Peter

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