Pycro-Manager: open-source software for customized and reproducible microscope control von Pinkard, Henry, Stuurman, Nico, Ivanov, Ivan E., Anthony, Nicholas M., Ouyang, Wei, Li, Bin, Yang, Bin, Tsuchida, Mark A., Chhun, Bryant, Zhang, Grace, Mei, Ryan, Anderson, Michael, Shepherd, Douglas P., Hunt-Isaak, Ian, Dunn, Raymond L., Jahr, Wiebke, Kato, Saul, Royer, Loïc A., Thiagarajah, Jay R., Eliceiri, Kevin W., Lundberg, Emma, Mehta, Shalin B., Waller, Laura

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A versatile oblique plane microscope for large-scale and high-resolution imaging of subcellular dynamics von Sapoznik, Etai, Chang, Bo-Jui, Huh, Jaewon, Ju, Robert J, Azarova, Evgenia V, Pohlkamp, Theresa, Welf, Erik S, Broadbent, David, Carisey, Alexandre F, Stehbens, Samantha J, Lee, Kyung-Min, Marín, Arnaldo, Hanker, Ariella B, Schmidt, Jens C, Arteaga, Carlos L, Yang, Bin, Kobayashi, Yoshihiko, Tata, Purushothama Rao, Kruithoff, Rory, Doubrovinski, Konstantin, Shepherd, Douglas P, Millett-Sikking, Alfred, York, Andrew G, Dean, Kevin M, Fiolka, Reto P

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Automatic and adaptive heterogeneous refractive index compensation for light-sheet microscopy von Ryan, Duncan P., Gould, Elizabeth A., Seedorf, Gregory J., Masihzadeh, Omid, Abman, Steven H., Vijayaraghavan, Sukumar, Macklin, Wendy B., Restrepo, Diego, Shepherd, Douglas P.

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Tutorial: practical considerations for tissue clearing and imaging von Weiss, Kurt R., Voigt, Fabian F., Shepherd, Douglas P., Huisken, Jan

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Distribution shapes govern the discovery of predictive models for gene regulation von Munsky, Brian, Li, Guoliang, Fox, Zachary R., Shepherd, Douglas P., Neuert, Gregor

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Multicolor structured illumination microscopy and quantitative control of polychromatic light with a digital micromirror device von Brown, Peter T, Kruithoff, Rory, Seedorf, Gregory J, Shepherd, Douglas P

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Model based optimization for refractive index mismatched light sheet imaging von Sheppard, Steven J, Brown, Peter T, Shepherd, Douglas P

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Heterogeneous response of endothelial cells to insulin-like growth factor 1 treatment is explained by spatially clustered sub-populations von Kim, Christina, Seedorf, Gregory J, Abman, Steven H, Shepherd, Douglas P

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Towards a unified pipeline for tissue-scale localization and identification of individual RNA molecules von Rojewski, Alex E., Schweiger, Max, Jazani, Sina, Shepherd, Douglas P., Pressé, Steve

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Quantitative image reconstruction for microscopy with correct sub-pixel photon statistics von Saurabh, Ayush, Bryan IV, Shep, Fox, Zachary, Brown, Peter, Shepherd, Douglas P., Pressé, Steve

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Fluorescence Intermittency and Energy Transfer in Small Clusters of Semiconductor Quantum Dots von Shepherd, Douglas P, Whitcomb, Kevin J, Milligan, Kenneth K, Goodwin, Peter M, Gelfand, Martin P, Van Orden, Alan

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In Situ Studies of Photoluminescence Quenching and Photocurrent Yield in Quantum Dot Sensitized Single Crystal TiO2 and ZnO Electrodes von Shepherd, Douglas P, Sambur, Justin B, Liang, Yong-Qi, Parkinson, Bruce A, Van Orden, Alan

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Resolution doubling in light-sheet microscopy via oblique plane structured illumination von Chen, Bingying, Chang, Bo-Jui, Roudot, Philippe, Zhou, Felix, Sapoznik, Etai, Marlar-Pavey, Madeleine, Hayes, James B., Brown, Peter T., Zeng, Chih-Wei, Lambert, Talley, Friedman, Jonathan R., Zhang, Chun-Li, Burnette, Dylan T., Shepherd, Douglas P., Dean, Kevin M., Fiolka, Reto P.

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Toward merging image analysis and gene network discovery from fluorescent in situ hybridization data von Schweiger, Max, Kilic, Zeliha, Moyer, Camille, Jazani, Sina, Kruithoff, Rory, Coullomb, Alexis, Zhou, Lei, Shepherd, Douglas P., Pressé, Steve

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Spatial wavefront shaping with a multipolar-resonant metasurface for structured illumination microscopy [Invited] von Roy, Tamal, Brown, Peter T., Shepherd, Douglas P., Poulikakos, Lisa V.

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Decoding the hydrodynamic properties of microscale helical propellers from Brownian fluctuations von Djutanta, Franky, Brown, Peter T, Nainggolan, Bonfilio, Coullomb, Alexis, Radhakrishnan, Sritharini, Sentosa, Jason, Yurke, Bernard, Hariadi, Rizal F, Shepherd, Douglas P

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Navigate: an open-source platform for smart light-sheet microscopy von Marin, Zach, Wang, Xiaoding, Collison, Dax W., McFadden, Conor, Lin, Jinlong, Borges, Hazel M., Chen, Bingying, Mehra, Dushyant, Shen, Qionghua, Gałecki, Seweryn, Daetwyler, Stephan, Sheppard, Steven J., Thien, Phu, Porter, Baylee A., Conzen, Suzanne D., Shepherd, Douglas P., Fiolka, Reto, Dean, Kevin M.

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Miniature structured illumination microscope for in vivo 3D imaging of brain structures with optical sectioning von Supekar, Omkar D, Sias, Andrew, Hansen, Sean R, Martinez, Gabriel, Peet, Graham C, Peng, Xiaoyu, Bright, Victor M, Hughes, Ethan G, Restrepo, Diego, Shepherd, Douglas P, Welle, Cristin G, Gopinath, Juliet T, Gibson, Emily A

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Quantifying three-dimensional rodent retina vascular development using optical tissue clearing and light-sheet microscopy von Singh, Jasmine N, Nowlin, Taylor M, Seedorf, Gregory J, Abman, Steven H, Shepherd, Douglas P

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Computational Proposal for Tracking Multiple Molecules in a Multifocus Confocal Setup von Jazani, Sina, Xu, Lance W. Q., Sgouralis, Ioannis, Shepherd, Douglas P., Pressé, Steve

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