Microbial defenses against mobile genetic elements and viruses: Who defends whom from what? von Rocha, Eduardo P C, Bikard, David

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Pervasive domestication of defective prophages by bacteria von Bobay, Louis-Marie, Touchon, Marie, Rocha, Eduardo P. C.

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Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility von Denise, Rémi, Abby, Sophie S, Rocha, Eduardo P C

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Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids von Redondo-Salvo, Santiago, Fernández-López, Raúl, Ruiz, Raúl, Vielva, Luis, de Toro, María, Rocha, Eduardo P. C., Garcillán-Barcia, M. Pilar, de la Cruz, Fernando

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The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella von Touchon, Marie, Rocha, Eduardo P C

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Phage-plasmids promote recombination and emergence of phages and plasmids von Pfeifer, Eugen, Rocha, Eduardo P. C.

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The chromosomal organization of horizontal gene transfer in bacteria von Oliveira, Pedro H., Touchon, Marie, Cury, Jean, Rocha, Eduardo P. C.

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Human commensal gut Proteobacteria withstand type VI secretion attacks through immunity protein-independent mechanisms von Flaugnatti, Nicolas, Isaac, Sandrine, Lemos Rocha, Leonardo F., Stutzmann, Sandrine, Rendueles, Olaya, Stoudmann, Candice, Vesel, Nina, Garcia-Garcera, Marc, Buffet, Amandine, Sana, Thibault G., Rocha, Eduardo P. C., Blokesch, Melanie

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Fractional series operators on discrete Hardy spaces von Rocha, P.

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Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes von Treangen, Todd J, Rocha, Eduardo P C

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The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts von Oliveira, Pedro H, Touchon, Marie, Rocha, Eduardo P C

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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins von Couvin, David, Bernheim, Aude, Toffano-Nioche, Claire, Touchon, Marie, Michalik, Juraj, Néron, Bertrand, Rocha, Eduardo P C, Vergnaud, Gilles, Gautheret, Daniel, Pourcel, Christine

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MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems von Abby, Sophie S, Néron, Bertrand, Ménager, Hervé, Touchon, Marie, Rocha, Eduardo P C

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The non-flagellar type III secretion system evolved from the bacterial flagellum and diversified into host-cell adapted systems von Abby, Sophie S, Rocha, Eduardo P C

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Vehicular Edge Computing: Architecture, Resource Management, Security, and Challenges von Meneguette, Rodolfo, De Grande, Robson, Ueyama, Jo, Filho, Geraldo P. Rocha, Madeira, Edmundo

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Neutral Theory, Microbial Practice: Challenges in Bacterial Population Genetics von Rocha, Eduardo P C

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Mobility of Plasmids von SMILLIE, Chris, GARCILLAN-BARCIA, M. Pilar, FRANCIA, M. Victoria, ROCHA, Eduardo P. C, DE LA CRUZ, Fernando

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Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae von Haudiquet, Matthieu, Buffet, Amandine, Rendueles, Olaya, Rocha, Eduardo P. C

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Integrative and conjugative elements and their hosts: composition, distribution and organization von Cury, Jean, Touchon, Marie, Rocha, Eduardo P C

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PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph von Gautreau, Guillaume, Bazin, Adelme, Gachet, Mathieu, Planel, Rémi, Burlot, Laura, Dubois, Mathieu, Perrin, Amandine, Médigue, Claudine, Calteau, Alexandra, Cruveiller, Stéphane, Matias, Catherine, Ambroise, Christophe, Rocha, Eduardo P C, Vallenet, David

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