Enhancer DNA methylation: implications for gene regulation von Angeloni, Allegra, Bogdanovic, Ozren

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Sequence determinants, function, and evolution of CpG islands von Angeloni, Allegra, Bogdanovic, Ozren

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Retention of paternal DNA methylome in the developing zebrafish germline von Skvortsova, Ksenia, Tarbashevich, Katsiaryna, Stehling, Martin, Lister, Ryan, Irimia, Manuel, Raz, Erez, Bogdanovic, Ozren

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Functions and mechanisms of epigenetic inheritance in animals von Skvortsova, Ksenia, Iovino, Nicola, Bogdanović, Ozren

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DNA methylation and the preservation of cell identity von Bogdanović, Ozren, Lister, Ryan

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Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability von de Mendoza, Alex, Nguyen, Trung Viet, Ford, Ethan, Poppe, Daniel, Buckberry, Sam, Pflueger, Jahnvi, Grimmer, Matthew R., Stolzenburg, Sabine, Bogdanovic, Ozren, Oshlack, Alicia, Farnham, Peggy J., Blancafort, Pilar, Lister, Ryan

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Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis von Bogdanovic, Ozren, Fernandez-Miñán, Ana, Tena, Juan J, de la Calle-Mustienes, Elisa, Hidalgo, Carmen, van Kruysbergen, Ila, van Heeringen, Simon J, Veenstra, Gert Jan C, Gómez-Skarmeta, José Luis

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Analysis of gene network bifurcation during optic cup morphogenesis in zebrafish von Buono, Lorena, Corbacho, Jorge, Naranjo, Silvia, Almuedo-Castillo, María, Moreno-Marmol, Tania, de la Cerda, Berta, Sanabria-Reinoso, Estefanía, Polvillo, Rocío, Díaz-Corrales, Francisco-Javier, Bogdanovic, Ozren, Bovolenta, Paola, Martínez-Morales, Juan-Ramón

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Active DNA demethylation at enhancers during the vertebrate phylotypic period von Bogdanović, Ozren, Smits, Arne H, de la Calle Mustienes, Elisa, Tena, Juan J, Ford, Ethan, Williams, Ruth, Senanayake, Upeka, Schultz, Matthew D, Hontelez, Saartje, van Kruijsbergen, Ila, Rayon, Teresa, Gnerlich, Felix, Carell, Thomas, Veenstra, Gert Jan C, Manzanares, Miguel, Sauka-Spengler, Tatjana, Ecker, Joseph R, Vermeulen, Michiel, Gómez-Skarmeta, José Luis, Lister, Ryan

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Kruppel-like factor 1 is a core cardiomyogenic trigger in zebrafish von Ogawa, Masahito, Geng, Fan-Suo, Humphreys, David T., Kristianto, Esther, Sheng, Delicia Z., Hui, Subhra P., Zhang, Yuxi, Sugimoto, Kotaro, Nakayama, Maki, Zheng, Dawei, Hesselson, Daniel, Hodson, Mark P., Bogdanovic, Ozren, Kikuchi, Kazu

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Embryonic transcription is controlled by maternally defined chromatin state von Hontelez, Saartje, van Kruijsbergen, Ila, Georgiou, Georgios, van Heeringen, Simon J., Bogdanovic, Ozren, Lister, Ryan, Veenstra, Gert Jan C.

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Extensive DNA methylome rearrangement during early lamprey embryogenesis von Angeloni, Allegra, Fissette, Skye, Kaya, Deniz, Hammond, Jillian M., Gamaarachchi, Hasindu, Deveson, Ira W., Klose, Robert J., Li, Weiming, Zhang, Xiaotian, Bogdanovic, Ozren

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Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints von Irimia, Manuel, Tena, Juan J, Alexis, Maria S, Fernandez-Miñan, Ana, Maeso, Ignacio, Bogdanovic, Ozren, de la Calle-Mustienes, Elisa, Roy, Scott W, Gómez-Skarmeta, José L, Fraser, Hunter B

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Author Correction: Analysis of gene network bifurcation during optic cup morphogenesis in zebrafish von Buono, Lorena, Corbacho, Jorge, Naranjo, Silvia, Almuedo-Castillo, María, Moreno-Marmol, Tania, de la Cerda, Berta, Sanabria-Reinoso, Estefanía, Polvillo, Rocío, Díaz-Corrales, Francisco-Javier, Bogdanovic, Ozren, Bovolenta, Paola, Martínez-Morales, Juan-Ramón

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The little skate genome and the evolutionary emergence of wing-like fins von Marlétaz, Ferdinand, de la Calle-Mustienes, Elisa, Acemel, Rafael D., Paliou, Christina, Naranjo, Silvia, Martínez-García, Pedro Manuel, Cases, Ildefonso, Sleight, Victoria A., Hirschberger, Christine, Marcet-Houben, Marina, Navon, Dina, Andrescavage, Ali, Skvortsova, Ksenia, Duckett, Paul Edward, González-Rajal, Álvaro, Bogdanovic, Ozren, Gibcus, Johan H., Yang, Liyan, Gallardo-Fuentes, Lourdes, Sospedra, Ismael, Lopez-Rios, Javier, Darbellay, Fabrice, Visel, Axel, Dekker, Job, Shubin, Neil, Gabaldón, Toni, Nakamura, Tetsuya, Tena, Juan J., Lupiáñez, Darío G., Rokhsar, Daniel S., Gómez-Skarmeta, José Luis

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A zebrafish functional genomics model to investigate the role of human A20 variants in vivo von Cultrone, Daniele, Zammit, Nathan W., Self, Eleanor, Postert, Benno, Han, Jeremy Z. R., Bailey, Jacqueline, Warren, Joanna, Croucher, David R., Kikuchi, Kazu, Bogdanovic, Ozren, Chtanova, Tatyana, Hesselson, Daniel, Grey, Shane T.

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DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns von Skvortsova, Ksenia, Masle-Farquhar, Etienne, Luu, Phuc-Loi, Song, Jenny Z., Qu, Wenjia, Zotenko, Elena, Gould, Cathryn M., Du, Qian, Peters, Timothy J., Colino-Sanguino, Yolanda, Pidsley, Ruth, Nair, Shalima S., Khoury, Amanda, Smith, Grady C., Miosge, Lisa A., Reed, Joanne H., Kench, James G., Rubin, Mark A., Horvath, Lisa, Bogdanovic, Ozren, Lim, Sue Mei, Polo, Jose M., Goodnow, Christopher C., Stirzaker, Clare, Clark, Susan J.

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Germ line–inherited H3K27me3 restricts enhancer function during maternal-to-zygotic transition von Zenk, Fides, Loeser, Eva, Schiavo, Rosaria, Kilpert, Fabian, Bogdanović, Ozren, Iovino, Nicola

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Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis von Bogdanovic, Ozren, Long, Steven W, van Heeringen, Simon J, Brinkman, Arie B, Gómez-Skarmeta, Jose Luis, Stunnenberg, Hendrik G, Jones, Peter L, Veenstra, Gert Jan C

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Meis1 coordinates a network of genes implicated in eye development and microphthalmia von Marcos, Séverine, González-Lázaro, Monica, Beccari, Leonardo, Carramolino, Laura, Martin-Bermejo, Maria Jesus, Amarie, Oana, Mateos-San Martín, Daniel, Torroja, Carlos, Bogdanović, Ozren, Doohan, Roisin, Puk, Oliver, Hrabě de Angelis, Martin, Graw, Jochen, Gomez-Skarmeta, Jose Luis, Casares, Fernando, Torres, Miguel, Bovolenta, Paola

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