Identification and manipulation of the molecular determinants influencing poliovirus recombination von Runckel, Charles, Westesson, Oscar, Andino, Raul, DeRisi, Joseph L

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Accurate reconstruction of insertion-deletion histories by statistical phylogenetics von Westesson, Oscar, Lunter, Gerton, Paten, Benedict, Holmes, Ian

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Global RNA Structure Analysis of Poliovirus Identifies a Conserved RNA Structure Involved in Viral Replication and Infectivity von Burrill, Cecily P, Westesson, Oscar, Schulte, Michael B, Strings, Vanessa R, Segal, Mark, Andino, Raul

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Developing and applying heterogeneous phylogenetic models with XRate von Westesson, Oscar, Holmes, Ian

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Accurate detection of recombinant breakpoints in whole-genome alignments von Westesson, Oscar, Holmes, Ian

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AAV ancestral reconstruction library enables selection of broadly infectious viral variants von Santiago-Ortiz, J, Ojala, D S, Westesson, O, Weinstein, J R, Wong, S Y, Steinsapir, A, Kumar, S, Holmes, I, Schaffer, D V

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Visualizing next-generation sequencing data with JBrowse von Westesson, Oscar, Skinner, Mitchell, Holmes, Ian

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HandAlign: Bayesian multiple sequence alignment, phylogeny and ancestral reconstruction von WESTESSON, Oscar, BARQUIST, Lars, HOLMES, Ian

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Abstract 2316: Integrated genomic and epigenomic cell-free DNA (cfDNA) analysis for the detection of early-stage colorectal cancer von Westesson, Oscar, Axelrod, Haley, Dean, Jason, He, Yupeng, Sample, Paul, Zotenko, Elena, McCole, Ruth, Goel, Mohit, Eid, Charbel, Kurata, Jessica, Kong, Yu, Hartwig, Anna, Snyder, Matthew, Greenleaf, Will, Raymond, Victoria M., Chudova, Darya, Jaimovich, Ariel, Talasaz, AmirAli

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Analytical validation of a tissue agnostic ctDNA MRD assay using tumor specific methylation and somatic variant profiles in early-stage CRC von Artieri, Carlo, Axelrod, Haley, Baca, Arthur, Burke, Jordan, Chudova, Darya, Dahdouli, Mahmoud, Ghadiri, Farsheed, Hartwig, Anna, He, Yupeng, Hite, Dustin, Jaimovich, Ariel, Juntilla, Marisa, Kurata, Jessica, Kong, Yu, Nance, Tracy, Ohshima, Saiyou, Sharma, Sweta, Westesson, Oscar, Talasaz, AmirAli

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Abstract 916: Combined genomic and epigenomic assessment of cell-free circulating tumor DNA (ctDNA) improves assay sensitivity in early-stage colorectal cancer (CRC) von Kim, Seung-Tae, Raymond, Victoria M., Park, Joon Oh, Zotenko, Elena, Park, Young Suk, Schultz, Matthew, Kang, Won Ki, Westesson, Oscar, Kim, Hee-Cheol, He, Yupeng, Odegaard, Justin I., Mortimer, Stefanie A., Greenleaf, William J., Jaimovich, Ariel, Lee, Jeeyun, Talasaz, AmirAli

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Accurate Detection of Recombinant Breakpoints in Whole-Genome Alignments: e1000318 von Westesson, Oscar, Holmes, Ian

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260. AAV Ancestral Reconstruction Library Enables Selection of Broadly Infectious Viral Variants von Ojala, David S., Santiago-Ortiz, Jorge, Westesson, Oscar, Weinstein, John R., Wong, Sophie Y., Steinsapir, Andrew, Kumar, Sanjay, Holmes, Ian, Schaffer, David

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Abstract 2173: Robust estimation of mutation burden von Westesson, Oscar, Nielsen, Rasmus, St John, John, Caulin, Aleah, Hahner, Nicholas, Stewart, Stewart, Foo, Catherine, Lung, Kimberly, Catalano, Jeff, Lee, Mandy, Giannikopoulos, Petros, Polkinghorn, Will, Wiessman, Jonathan, Regev, Aviv, Bivona, Trever

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Abstract 4707: Comprehensive integrated genomic analysis von Foo, Catherine K., John, John St, Hahner, Nicholas, Westesson, Oscar, Skinner, Mitchell E., Parikh, Urvish, Lung, Kimberly, Cauhlin, Aleah F., Catalano, Jeffrey P., Wellde, Anne S., Barry, Jonathan K., Wellde, George W., Ma, Patrick, Rosell, Rafael, Zorilla, Andres Felipe Cardona, Polkinghorn, William R., Bivona, Trever G., Weissman, Jonathan S., Giannikopoulos, Petros

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Integrated genomic analysis for revealing broad remodeling of EGFR-targeted therapy resistant lung cancers von Giannikopoulos, Petros, St. John, John A., Parker, Joel S, Westesson, Oscar, Hahner, Nicholas J., Karachaliou, Niki, Costa, Carlota, Caulin, Aleah F., Lozano, Maria D., Perez-Gracia, Jose Luis, Curioni Fontecedro, Alessandra, Jantus-Lewintre, Eloisa, Vergnenegre, Alain, Gervais, Radj, Bordoni, Rodolfo, Stahel, Rolf A., Cardona Zorrilla, Andres Felipe, Weissman, Jonathan S., Polkinghorn, William Reilly, Bivona, Trever Grant

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Clinical validation of a comprehensive cancer genomics analysis for lung cancer patients von Foo, Catherine K., St. John, John A., Westesson, Oscar, Hahner, Nicholas J., Caulin, Aleah F., Skinner, Mitchell E., Catalano, Jeffrey P., Lung, Kimberly, Parikh, Urvish G., Wellde, Anne S., Barry, Jonathan K., Wellde, George W., Rosell, Rafael, Weissman, Jonathan S., Polkinghorn, William Reilly, Bivona, Trever Grant, Giannikopoulos, Petros

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Abstract 954: Integrated genomic analysis by whole exome and transcriptome sequencing of tumor samples from EGFR-mutant non-small-cell lung cancer patients with acquired resistance... von Giannikopoulos, Petros, John, John St, Hahner, Nicholas, Parker, Joel S., Karachaliou, Niki, Costa, Carlota, Westesson, Oscar, Parikh, Urvish, Foo, Catherine K., Cauhlin, Aleah F., Lozano, Maria D., Viteri, Santiago, Perez-Gracia, Jose L., Curioni, Alessandra, Jantus-Lewintre, Eloisa, Camps, Carlos, Vergenegre, Alain, Gervais, Radj, Wellde, Anne, Barry, Jonathan, Wellde, George W., Bordoni, Rodolfo, Stahel, Rolf, Zorilla, Andres Felipe Cardona, Polkinghorn, William R., Weissman, Jonathan, Bivona, Trever G., Rosell, Rafael

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Identification and Manipulation of the Molecular Determinants Influencing Poliovirus Recombination. e1003164 von Runckel, Charles, Westesson, Oscar, Andino, Raul, DeRisi, Joseph L

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METHODS AND SYSTEMS FOR DETERMINING THE CELLULAR ORIGIN OF CELL-FREE DNA von WESTESSON, OSCAR, ZOTENKO, ELENA

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