Effective connectivity profile: A structural representation that evidences the relationship between protein structures and sequences von Bastolla, Ugo, Ortíz, Angel R., Porto, Markus, Teichert, Florian

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Microarray-based identification of antigenic variants of foot-and-mouth disease virus: a bioinformatics quality assessment von Martín, Verónica, Perales, Celia, Abia, David, Ortíz, Angel R, Domingo, Esteban, Briones, Carlos

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Local interactions in protein folding determined through an inverse folding model von Bastolla, Ugo, Porto, Markus, Ortíz, Angel R.

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MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison von Ortiz, Angel R., Strauss, Charlie E.M., Olmea, Osvaldo

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Molecular basis of the differential interaction with lithium of glycine transporters GLYT1 and GLYT2 von Pérez‐Siles, Gonzalo, Morreale, Antonio, Leo‐Macías, Alejandra, Pita, Guillermo, Ortíz, Ángel R., Aragón, Carmen, López‐Corcuera, Beatriz

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Protein-protein interaction antagonists as novel inhibitors of non-canonical polyubiquitylation von Scheper, Johanna, Guerra-Rebollo, Marta, Sanclimens, Glòria, Moure, Alejandra, Masip, Isabel, González-Ruiz, Domingo, Rubio, Nuria, Crosas, Bernat, Meca-Cortés, Oscar, Loukili, Noureddine, Plans, Vanessa, Morreale, Antonio, Blanco, Jerónimo, Ortiz, Angel R, Messeguer, Angel, Thomson, Timothy M

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An aspartate residue in the external vestibule of GLYT2 (glycine transporter 2) controls cation access and transport coupling von Pérez-Siles, Gonzalo, Núñez, Enrique, Morreale, Antonio, Jiménez, Esperanza, Leo-Macías, Alejandra, Pita, Guillermo, Cherubino, Francesca, Sangaletti, Rachele, Bossi, Elena, Ortíz, Angel R, Aragón, Carmen, López-Corcuera, Beatriz

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An Analysis of Core Deformations in Protein Superfamilies von Leo-Macias, Alejandra, Lopez-Romero, Pedro, Lupyan, Dmitry, Zerbino, Daniel, Ortiz, Angel R.

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A conformation- and avidity-based proofreading mechanism for the TCR–CD3 complex von Schamel, Wolfgang W.A., Risueño, Ruth M., Minguet, Susana, Ortíz, Angel R., Alarcón, Balbino

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Improvement of Comparative Model Accuracy by Free-Energy Optimization along Principal Components of Natural Structural Variation von Qian, Bin, Ortiz, Angel R., Baker, David, Levitt, Michael

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Local interactions in protein folding determined through an inverse folding model von Bastolla, Ugo, Porto, Markus, Ortíz, Angel R.

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CAFASP3: The third critical assessment of fully automated structure prediction methods von Fischer, Daniel, Rychlewski, Leszek, Dunbrack Jr, Roland L., Ortiz, Angel R., Elofsson, Arne

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Comparative Binding Energy Analysis Considering Multiple Receptors:  A Step toward 3D-QSAR Models for Multiple Targets von Murcia, Marta, Morreale, Antonio, Ortiz, Angel R

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Comparative analysis of chloroplast genomes: functional annotation, genome-based phylogeny, and deduced evolutionary patterns von De Las Rivas, Javier, Lozano, Juan Jose, Ortiz, Angel R

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Comparative Binding Energy Analysis of HIV-1 Protease Inhibitors:  Incorporation of Solvent Effects and Validation as a Powerful Tool in Receptor-Based Drug Design von Pérez, Carlos, Pastor, Manuel, Ortiz, Angel R, Gago, Federico

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Prediction of Drug Binding Affinities by Comparative Binding Energy Analysis von Ortiz, Angel R, Pisabarro, M. Teresa, Gago, Federico, Wade, Rebecca C

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A new progressive-iterative algorithm for multiple structure alignment von Lupyan, Dmitry, Leo-Macias, Alejandra, Ortiz, Angel R.

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Solution structure of the hypothetical protein TA0095 from Thermoplasma acidophilum: A novel superfamily with a two‐layer sandwich architecture von León, Esther, Yee, Adelinda, Ortíz, Angel R., Santoro, Jorge, Rico, Manuel, Jiménez, M. Angeles

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Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures von Pascual-García, Alberto, Abia, David, Ortiz, Angel R, Bastolla, Ugo

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Nativelike Topology Assembly of Small Proteins Using Predicted Restraints in Monte Carlo Folding Simulations von Ortiz, Angel R., Kolinski, Andrzej, Skolnick, Jeffrey

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