Harnessing protein folding neural networks for peptide–protein docking von Tsaban, Tomer, Varga, Julia K., Avraham, Orly, Ben-Aharon, Ziv, Khramushin, Alisa, Schueler-Furman, Ora

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Sub-angstrom modeling of complexes between flexible peptides and globular proteins von Raveh, Barak, London, Nir, Schueler-Furman, Ora

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Who Binds Better? Let Alphafold2 Decide von Varga, Julia K., Schueler‐Furman, Ora

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Structural study of UFL1‐UFC1 interaction uncovers the role of UFL1 N‐terminal helix in ufmylation von Banerjee, Sayanika, Varga, Julia K, Kumar, Manoj, Zoltsman, Guy, Rotem‐Bamberger, Shahar, Cohen‐Kfir, Einav, Isupov, Michail N, Rosenzweig, Rina, Schueler‐Furman, Ora, Wiener, Reuven

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Targeting an Interaction Between Two Disordered Domains by Using a Designed Peptide von Mayer, Guy, Shpilt, Zohar, Bressler, Shachar, Marcu, Orly, Schueler‐Furman, Ora, Tshuva, Edit Y., Friedler, Assaf

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ClusPro in rounds 38 to 45 of CAPRI: Toward combining template‐based methods with free docking von Padhorny, Dzmitry, Porter, Kathryn A., Ignatov, Mikhail, Alekseenko, Andrey, Beglov, Dmitri, Kotelnikov, Sergei, Ashizawa, Ryota, Desta, Israel, Alam, Nawsad, Sun, Zhuyezi, Brini, Emiliano, Dill, Ken, Schueler‐Furman, Ora, Vajda, Sandor, Kozakov, Dima

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Targeting an Interaction Between Two Disordered Domains by Using a Designed Peptide von Mayer, Guy, Shpilt, Zohar, Bressler, Shachar, Marcu, Orly, Schueler‐Furman, Ora, Tshuva, Edit Y., Friedler, Assaf

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Modeling beta‐sheet peptide‐protein interactions: Rosetta FlexPepDock in CAPRI rounds 38‐45 von Khramushin, Alisa, Marcu, Orly, Alam, Nawsad, Shimony, Orly, Padhorny, Dzmitry, Brini, Emiliano, Dill, Ken A., Vajda, Sandor, Kozakov, Dima, Schueler‐Furman, Ora

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Structural basis for UFM1 transfer from UBA5 to UFC1 von Kumar, Manoj, Padala, Prasanth, Fahoum, Jamal, Hassouna, Fouad, Tsaban, Tomer, Zoltsman, Guy, Banerjee, Sayanika, Cohen-Kfir, Einav, Dessau, Moshe, Rosenzweig, Rina, Isupov, Michail N., Schueler-Furman, Ora, Wiener, Reuven

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A Versatile Synthetic Affinity Probe Reveals Inhibitory Synapse Ultrastructure and Brain Connectivity von Khayenko, Vladimir, Schulte, Clemens, Reis, Sara L., Avraham, Orly, Schietroma, Cataldo, Worschech, Rafael, Nordblom, Noah F., Kachler, Sonja, Villmann, Carmen, Heinze, Katrin G., Schlosser, Andreas, Schueler‐Furman, Ora, Tovote, Philip, Specht, Christian G., Maric, Hans M.

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Structure-based prediction of HDAC6 substrates validated by enzymatic assay reveals determinants of promiscuity and detects new potential substrates von Varga, Julia K., Diffley, Kelsey, Welker Leng, Katherine R., Fierke, Carol A., Schueler-Furman, Ora

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Improved side‐chain modeling for protein–protein docking von Wang, Chu, Schueler‐Furman, Ora, Baker, David

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FlexPepDock lessons from CAPRI peptide–protein rounds and suggested new criteria for assessment of model quality and utility von Marcu, Orly, Dodson, Emma‐Joy, Alam, Nawsad, Sperber, Michal, Kozakov, Dima, Lensink, Marc F., Schueler‐Furman, Ora

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Phosphorylation of the WWOX Protein Regulates Its Interaction with p73 von Lahav, Noa, Rotem‐Bamberger, Shahar, Fahoum, Jamal, Dodson, Emma‐Joy, Kraus, Yahel, Mousa, Reem, Metanis, Norman, Friedler, Assaf, Schueler‐Furman, Ora

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Yeast aconitase mitochondrial import is modulated by interactions of its C and N terminal domains and Ssa1/2 (Hsp70) von Ben-Menachem, Reut, Wang, Katherine, Marcu, Orly, Yu, Zhang, Lim, Teck Kwang, Lin, Qingsong, Schueler- Furman, Ora, Pines, Ophry

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The Structural Basis of Peptide-Protein Binding Strategies von London, Nir, Movshovitz-Attias, Dana, Schueler-Furman, Ora

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Macromolecular modeling and design in Rosetta: recent methods and frameworks von Leman, Julia Koehler, Weitzner, Brian D., Lewis, Steven M., Adolf-Bryfogle, Jared, Alam, Nawsad, Alford, Rebecca F., Aprahamian, Melanie, Baker, David, Barlow, Kyle A., Basanta, Benjamin, Bender, Brian J., Blacklock, Kristin, Bonet, Jaume, Boyken, Scott E., Bradley, Phil, Bystroff, Chris, Conway, Patrick, Cooper, Seth, Correia, Bruno E., Coventry, Brian, Das, Rhiju, DiMaio, Frank, Dsilva, Lorna, Dunbrack, Roland, Ford, Alexander S., Fu, Darwin Y., Geniesse, Caleb, Goldschmidt, Lukasz, Gowthaman, Ragul, Gray, Jeffrey J., Gront, Dominik, Guffy, Sharon, Huang, Po-Ssu, Jacobs, Tim M., Jeliazkov, Jeliazko R., Johnson, David K., Kappel, Kalli, Karanicolas, John, Khakzad, Hamed, Khar, Karen R., Khare, Sagar D., Khatib, Firas, Khramushin, Alisa, King, Indigo C., Kleffner, Robert, Koepnick, Brian, Kortemme, Tanja, Kuenze, Georg, Kuhlman, Brian, Kuroda, Daisuke, Labonte, Jason W., Lai, Jason K., Lapidoth, Gideon, Leaver-Fay, Andrew, Lindert, Steffen, Linsky, Thomas, London, Nir, Lubin, Joseph H., Lyskov, Sergey, Maguire, Jack, Malmström, Lars, Marcos, Enrique, Marcu, Orly, Marze, Nicholas A., Meiler, Jens, Moretti, Rocco, Mulligan, Vikram Khipple, Nerli, Santrupti, Norn, Christoffer, Ollikainen, Noah, Ovchinnikov, Sergey, Pacella, Michael S., Pan, Xingjie, Park, Hahnbeom, Pavlovicz, Ryan E., Pethe, Manasi, Pilla, Kala Bharath, Raveh, Barak, Renfrew, P. Douglas, Burman, Shourya S. Roy, Rubenstein, Aliza, Sauer, Marion F., Scheck, Andreas, Schief, William, Schueler-Furman, Ora, Sedan, Yuval, Sevy, Alexander M., Sgourakis, Nikolaos G., Shi, Lei, Siegel, Justin B., Silva, Daniel-Adriano, Smith, Shannon, Song, Yifan, Stein, Amelie, Szegedy, Maria, Teets, Frank D., Thyme, Summer B., Wang, Ray Yu-Ruei, Watkins, Andrew, Zimmerman, Lior

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Rosetta FlexPepDock web server-high resolution modeling of peptide-protein interactions von London, Nir, Raveh, Barak, Cohen, Eyal, Fathi, Guy, Schueler-Furman, Ora

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MYORG is associated with recessive primary familial brain calcification von Arkadir, David, Lossos, Alexander, Rahat, Dolev, Abu Snineh, Muneer, Schueler‐Furman, Ora, Nitschke, Silvia, Minassian, Berge A., Sadaka, Yair, Lerer, Israela, Tabach, Yuval, Meiner, Vardiella

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Encounter complexes and dimensionality reduction in protein-protein association von Kozakov, Dima, Li, Keyong, Hall, David R, Beglov, Dmitri, Zheng, Jiefu, Vakili, Pirooz, Schueler-Furman, Ora, Paschalidis, Ioannis Ch, Clore, G Marius, Vajda, Sandor

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