H++ 3.0: automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations von Anandakrishnan, Ramu, Aguilar, Boris, Onufriev, Alexey V

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Accuracy limit of rigid 3-point water models von Izadi, Saeed, Onufriev, Alexey V.

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Building Water Models: A Different Approach von Izadi, Saeed, Anandakrishnan, Ramu, Onufriev, Alexey V

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Generalized Born Implicit Solvent Models for Biomolecules von Onufriev, Alexey V, Case, David A

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The nucleosome: from structure to function through physics von Onufriev, Alexey V, Schiessel, Helmut

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Water models for biomolecular simulations von Onufriev, Alexey V., Izadi, Saeed

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Speed of Conformational Change: Comparing Explicit and Implicit Solvent Molecular Dynamics Simulations von Anandakrishnan, Ramu, Drozdetski, Aleksander, Walker, Ross C., Onufriev, Alexey V.

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General Purpose Water Model Can Improve Atomistic Simulations of Intrinsically Disordered Proteins von Shabane, Parviz Seifpanahi, Izadi, Saeed, Onufriev, Alexey V

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Protonation and pK changes in protein–ligand binding von Onufriev, Alexey V., Alexov, Emil

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Exploring optimization strategies for improving explicit water models: Rigid n-point model and polarizable model based on Drude oscillator von Xiong, Yeyue, Onufriev, Alexey V

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Ischemic Stroke, Glucocorticoids, and Remote Hippocampal Damage: A Translational Outlook and Implications for Modeling von Gulyaeva, Natalia V, Onufriev, Mikhail V, Moiseeva, Yulia V

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Biologically relevant small variations of intra-cellular pH can have significant effect on stability of protein-DNA complexes, including the nucleosome von Onufriev, Alexey V

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Opposing Effects of Multivalent Ions on the Flexibility of DNA and RNA von Drozdetski, Aleksander V, Tolokh, Igor S, Pollack, Lois, Baker, Nathan, Onufriev, Alexey V

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A Comparative Study of Koizumi and Longa Methods of Intraluminal Filament Middle Cerebral Artery Occlusion in Rats: Early Corticosterone and Inflammatory Response in the Hippocampu... von Onufriev, Mikhail V, Moiseeva, Yulia V, Zhanina, Marina Y, Lazareva, Natalia A, Gulyaeva, Natalia V

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Partially Assembled Nucleosome Structures at Atomic Detail von Rychkov, Georgy N., Ilatovskiy, Andrey V., Nazarov, Igor B., Shvetsov, Alexey V., Lebedev, Dmitry V., Konev, Alexander Y., Isaev-Ivanov, Vladimir V., Onufriev, Alexey V.

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Modulation of nucleosomal DNA accessibility via charge-altering post-translational modifications in histone core von Fenley, Andrew T, Anandakrishnan, Ramu, Kidane, Yared H, Onufriev, Alexey V

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The impact of long-term isolation on anxiety, depressive-like and social behavior in aging Wistar-Kyoto (WKY) and spontaneously hypertensive (SHR) male rats von Mamedova, Diana I., Nedogreeva, Olga A., Manolova, Anna O., Ovchinnikova, Viktoria O., Kostryukov, Pavel A., Lazareva, Natalia A., Moiseeva, Yulia V., Tret’yakova, Liya V., Kvichansky, Alexey A., Onufriev, Mikhail V., Aniol, Victor A., Novikova, Margarita R., Gulyaeva, Natalia V., Stepanichev, Mikhail Yu

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Linear relationship between peak and season-long abundances in insects von Onufrieva, Ksenia S, Onufriev, Alexey V

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Neuroinflammation and Neuronal Loss in the Hippocampus Are Associated with Immediate Posttraumatic Seizures and Corticosterone Elevation in Rats von Komoltsev, Ilia G., Frankevich, Stepan O., Shirobokova, Natalia I., Volkova, Aleksandra A., Onufriev, Mikhail V., Moiseeva, Julia V., Novikova, Margarita R., Gulyaeva, Natalia V.

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Measurement of ZrC properties up to 5000 K by fast electrical pulse heating method von Savvatimskiy, Alexander I., Onufriev, Sergey V., Muboyadzhyan, Sergey A.

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