The Shadow Map: A General Contact Definition for Capturing the Dynamics of Biomolecular Folding and Function von Noel, Jeffrey K, Whitford, Paul C, Onuchic, José N

Volltext

SMOG 2: A Versatile Software Package for Generating Structure-Based Models von Noel, Jeffrey K, Levi, Mariana, Raghunathan, Mohit, Lammert, Heiko, Hayes, Ryan L, Onuchic, José N, Whitford, Paul C

Volltext

Implications of the Hybrid Epithelial/Mesenchymal Phenotype in Metastasis von Jolly, Mohit Kumar, Boareto, Marcelo, Huang, Bin, Jia, Dongya, Lu, Mingyang, Ben-Jacob, Eshel, Onuchic, José N, Levine, Herbert

Volltext

De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture von Di Pierro, Michele, Cheng, Ryan R., Aiden, Erez Lieberman, Wolynes, Peter G., Onuchic, José N.

Volltext

Anomalous diffusion, spatial coherence, and viscoelasticity from the energy landscape of human chromosomes von Di Pierro, Michele, Potoyan, Davit A., Wolynes, Peter G., Onuchic, José N.

Volltext

Coevolutionary signals across protein lineages help capture multiple protein conformations von Morcos, Faruck, Jana, Biman, Hwa, Terence, Onuchic, José N.

Volltext

Jagged mediates differences in normal and tumor angiogenesis by affecting tip-stalk fate decision von Boareto, Marcelo, Mohit Kumar Jolly, Eshel Ben-Jacob, Joséé N. Onuchic

Volltext

Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information von Cheng, Ryan R., Morcos, Faruck, Levine, Herbert, Onuchic, José N.

Volltext

Stochastic fluctuations promote ordered pattern formation of cells in the Notch-Delta signaling pathway von Galbraith, Madeline, Bocci, Federico, Onuchic, José N

Volltext

Redox-dependent gating of VDAC by mitoNEET von Lipper, Colin H., Stofleth, Jason T., Bai, Fang, Sohn, Yang-Sung, Roy, Susmita, Mittler, Ron, Nechushtai, Rachel, Onuchic, José N., Jennings, Patricia A.

Volltext

Strain Mediated Adaptation Is Key for Myosin Mechanochemistry: Discovering General Rules for Motor Activity von Jana, Biman, Onuchic, José N

Volltext

Numb prevents a complete epithelial–mesenchymal transition by modulating Notch signalling von Bocci, Federico, Jolly, Mohit K., Tripathi, Satyendra C., Aguilar, Mitzi, Hanash, Samir M., Levine, Herbert, Onuchic, José N.

Volltext

An associative memory Hamiltonian model for DNA and nucleosomes von Lu, Weiqi, Onuchic, José N, Di Pierro, Michele

Volltext

NEET Proteins: A New Link Between Iron Metabolism, Reactive Oxygen Species, and Cancer von Mittler, Ron, Darash-Yahana, Merav, Sohn, Yang Sung, Bai, Fang, Song, Luhua, Cabantchik, Ioav Z, Jennings, Patricia A, Onuchic, José N, Nechushtai, Rachel

Volltext

Genomics-aided structure prediction von Sułkowska, Joanna I, Morcos, Faruck, Weigt, Martin, Hwa, Terence, Onuchic, José N

Volltext

MicroRNA-based regulation of epithelial–hybrid–mesenchymal fate determination von Lu, Mingyang, Jolly, Mohit Kumar, Levine, Herbert, Onuchic, José N., Ben-Jacob, Eshel

Volltext

Towards decoding the coupled decision-making of metabolism and epithelial-to-mesenchymal transition in cancer von Jia, Dongya, Park, Jun Hyoung, Kaur, Harsimran, Jung, Kwang Hwa, Yang, Sukjin, Tripathi, Shubham, Galbraith, Madeline, Deng, Youyuan, Jolly, Mohit Kumar, Kaipparettu, Benny Abraham, Onuchic, José N., Levine, Herbert

Volltext

Toward understanding cancer stem cell heterogeneity in the tumor microenvironment von Bocci, Federico, Gearhart-Serna, Larisa, Boareto, Marcelo, Ribeiro, Mariana, Ben-Jacob, Eshel, Devi, Gayathri R., Levine, Herbert, Onuchic, José Nelson, Jolly, Mohit Kumar

Volltext

Coevolutionary information, protein folding landscapes, and the thermodynamics of natural selection von Morcos, Faruck, Schafer, Nicholas P., Cheng, Ryan R., Onuchic, José N., Wolynes, Peter G.

Volltext

Tristability in Cancer-Associated MicroRNA-TF Chimera Toggle Switch von Lu, Mingyang, Jolly, Mohit Kumar, Gomoto, Ryan, Huang, Bin, Onuchic, José, Ben-Jacob, Eshel

Volltext