ggseqlogo: a versatile R package for drawing sequence logos von Wagih, Omar

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Uncovering Phosphorylation-Based Specificities through Functional Interaction Networks von Wagih, Omar, Sugiyama, Naoyuki, Ishihama, Yasushi, Beltrao, Pedro

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The mutational landscape of phosphorylation signaling in cancer von Reimand, Jüri, Wagih, Omar, Bader, Gary D.

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gitter: a robust and accurate method for quantification of colony sizes from plate images von Wagih, Omar, Parts, Leopold

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A resource of variant effect predictions of single nucleotide variants in model organisms von Wagih, Omar, Galardini, Marco, Busby, Bede P, Memon, Danish, Typas, Athanasios, Beltrao, Pedro

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Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design von Smith, Justin D, Suresh, Sundari, Schlecht, Ulrich, Wu, Manhong, Wagih, Omar, Peltz, Gary, Davis, Ronald W, Steinmetz, Lars M, Parts, Leopold, St Onge, Robert P

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MIMP: predicting the impact of mutations on kinase-substrate phosphorylation von Wagih, Omar, Reimand, Jüri, Bader, Gary D

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Evolutionary constraint and disease associations of post-translational modification sites in human genomes von Reimand, Jüri, Wagih, Omar, Bader, Gary D

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SGAtools: one-stop analysis and visualization of array-based genetic interaction screens von Wagih, Omar, Usaj, Matej, Baryshnikova, Anastasia, VanderSluis, Benjamin, Kuzmin, Elena, Costanzo, Michael, Myers, Chad L, Andrews, Brenda J, Boone, Charles M, Parts, Leopold

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Phenotype inference in an Escherichia coli strain panel von Galardini, Marco, Koumoutsi, Alexandra, Herrera-Dominguez, Lucia, Cordero Varela, Juan Antonio, Telzerow, Anja, Wagih, Omar, Wartel, Morgane, Clermont, Olivier, Denamur, Erick, Typas, Athanasios, Beltrao, Pedro

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Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast von Gonçalves, Emanuel, Raguz Nakic, Zrinka, Zampieri, Mattia, Wagih, Omar, Ochoa, David, Sauer, Uwe, Beltrao, Pedro, Saez-Rodriguez, Julio

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Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli von Babu, Mohan, Arnold, Roland, Bundalovic-Torma, Cedoljub, Gagarinova, Alla, Wong, Keith S, Kumar, Ashwani, Stewart, Geordie, Samanfar, Bahram, Aoki, Hiroyuki, Wagih, Omar, Vlasblom, James, Phanse, Sadhna, Lad, Krunal, Yeou Hsiung Yu, Angela, Graham, Christopher, Jin, Ke, Brown, Eric, Golshani, Ashkan, Kim, Philip, Moreno-Hagelsieb, Gabriel, Greenblatt, Jack, Houry, Walid A, Parkinson, John, Emili, Andrew

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A curated census of pathogenic and likely pathogenic UTR variants and evaluation of deep learning models for variant effect prediction von Bohn, Emma, Lau, Tammy T Y, Wagih, Omar, Masud, Tehmina, Merico, Daniele

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Conditional Epistatic Interaction Maps Reveal Global Functional Rewiring of Genome Integrity Pathways in Escherichia coli von Kumar, Ashwani, Beloglazova, Natalia, Bundalovic-Torma, Cedoljub, Phanse, Sadhna, Deineko, Viktor, Gagarinova, Alla, Musso, Gabriel, Vlasblom, James, Lemak, Sofia, Hooshyar, Mohsen, Minic, Zoran, Wagih, Omar, Mosca, Roberto, Aloy, Patrick, Golshani, Ashkan, Parkinson, John, Emili, Andrew, Yakunin, Alexander F., Babu, Mohan

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Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes von Johnson, Jeffrey R, Santos, Silvia D, Johnson, Tasha, Pieper, Ursula, Strumillo, Marta, Wagih, Omar, Sali, Andrej, Krogan, Nevan J, Beltrao, Pedro

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Identifications of Putative PKA Substrates with Quantitative Phosphoproteomics and Primary-Sequence-Based Scoring von Imamura, Haruna, Wagih, Omar, Niinae, Tomoya, Sugiyama, Naoyuki, Beltrao, Pedro, Ishihama, Yasushi

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Microevolution of Serial Clinical Isolates of Cryptococcus neoformans var. grubii and C. gattii von Chen, Yuan, Farrer, Rhys A, Giamberardino, Charles, Sakthikumar, Sharadha, Jones, Alexander, Yang, Timothy, Tenor, Jennifer L, Wagih, Omar, Van Wyk, Marelize, Govender, Nelesh P, Mitchell, Thomas G, Litvintseva, Anastasia P, Cuomo, Christina A, Perfect, John R

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Genetic Interaction Scoring Procedure for Bacterial Species von Wagih, Omar, Parts, Leopold

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Evolutionary Constraint and Disease Associations of Post-Translational Modification Sites in Human Genomes: e1004919 von Reimand, Jüri, Wagih, Omar, Bader, Gary D

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Elucidating the mechanistic impact of single nucleotide variants in model organisms von Wagih, Omar

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