Metagenomic sequencing of post-mortem tissue samples for the identification of pathogens associated with neonatal deaths von Baillie, Vicky L., Madhi, Shabir A., Ahyong, Vida, Olwagen, Courtney P.

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Single priming and a booster dose of 10-valent and 13-valent pneumococcal conjugate vaccine (PCV) maintains suppression of vaccine serotype colonization in South African children a... von Olwagen, Courtney P, Izu, Alane, Van der Merwe, Lara, Jose, Lisa, Koen, Anthonet, Madhi, Shabir A

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Comparison of traditional culture and molecular qPCR for detection of simultaneous carriage of multiple pneumococcal serotypes in African children von Olwagen, Courtney P., Adrian, Peter V., Madhi, Shabir A.

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Optimization of a high-throughput nanofluidic real-time PCR to detect and quantify of 15 bacterial species and 92 Streptococcus pneumoniae serotypes von Downs, Sarah L., Madhi, Shabir. A., van der Merwe, Lara, Nunes, Marta. C., Olwagen, Courtney P.

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Nanofluidic qPCR unable to detect and serotype Streptococcus pneumoniae in urine samples of hospitalized South African patients with community-acquired pneumonia von Olwagen, Courtney P., Jeche, Tariro R., Van Der Merwe, Lara, Nunes, Marta C., Madhi, Shabir A., Baillie, Vicky L.

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Streptococcus pneumoniae and other bacterial nasopharyngeal colonization seven years post-introduction of 13-valent pneumococcal conjugate vaccine in South African children von Downs, Sarah L., Olwagen, Courtney P., Van Der Merwe, Lara, Nzenze, Susan A., Nunes, Marta C., Madhi, Shabir A.

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Performance of the Biomark HD real-time qPCR System (Fluidigm) for the detection of nasopharyngeal bacterial pathogens and Streptococcus pneumoniae typing von Olwagen, Courtney P., Adrian, Peter V., Madhi, Shabir A.

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Evaluation of the impact of HIV-1 infection and density of common nasopharyngeal bacterial colonizers in South African children immunized with 7-valent pneumococcal conjugate vacci... von Olwagen, Courtney P., Adrian, Peter V., Madhi, Shabir A.

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Review on Clinical and Molecular Epidemiology of Human Rhinovirus–Associated Lower Respiratory Tract Infections in African and Southeast Asian Children von Baillie, Vicky L, Olwagen, Courtney P, Madhi, Shabir A

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Evaluation of the association of pneumococcal conjugate vaccine immunization and density of nasopharyngeal bacterial colonization using a multiplex quantitative polymerase chain re... von Olwagen, Courtney P., Adrian, Peter V., Nunes, Marta C., Madhi, Shabir A.

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Use of Multiplex Quantitative PCR To Evaluate the Impact of Pneumococcal Conjugate Vaccine on Nasopharyngeal Pneumococcal Colonization in African Children von Olwagen, Courtney P, Adrian, Peter V, Nunes, Marta C, Groome, Michelle J, Cotton, Mark F, Violari, Avy, Madhi, Shabir A

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Bacterial nasopharyngeal colonisation in children in South Africa before and during the COVID-19 pandemic: an observational study von Olwagen, Courtney P, Downs, Sarah L, Izu, Alane, Tharasimbi, Lebohang, Van Der Merwe, Lara, Nunes, Marta C, Madhi, Shabir A

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Single priming and booster dose of ten-valent and 13-valent pneumococcal conjugate vaccines and Streptococcus pneumoniae colonisation in children in South Africa: a single-centre,... von Olwagen, Courtney P, Izu, Alane, Mutsaerts, Eleonora A M L, Jose, Lisa, Koen, Anthonet, Downs, Sarah L, Van Der Merwe, Lara, Laubscher, Matt, Nana, Amit J, Moultrie, Andrew, Cutland, Clare L, Dorfman, Jeffrey R, Madhi, Shabir A

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All-cause and pathogen-specific lower respiratory tract infection hospital admissions in children younger than 5 years during the COVID-19 pandemic (2020–22) compared with the pre-... von Izu, Alane, Nunes, Marta C, Solomon, Fatima, Baillie, Vicky, Serafin, Natali, Verwey, Charl, Moore, David P, Laubscher, Marius, Ncube, Musawenkosi, Olwagen, Courtney, Dangor, Ziyaad, Madhi, Shabir A

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Characterization of bacterial and viral pathogens in the respiratory tract of children with HIV-associated chronic lung disease: a case-control study von Mushunje, Prince K, Dube, Felix S, Olwagen, Courtney, Madhi, Shabir, Odland, Jon Ø, Ferrand, Rashida A, Nicol, Mark P, Abotsi, Regina E

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