The Colonic Crypt Protects Stem Cells from Microbiota-Derived Metabolites von Kaiko, Gerard E., Ryu, Stacy H., Koues, Olivia I., Collins, Patrick L., Solnica-Krezel, Lilianna, Pearce, Edward J., Pearce, Erika L., Oltz, Eugene M., Stappenbeck, Thaddeus S.

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Neutralization of the SARS-CoV-2 Omicron BA.4/5 and BA.2.12.1 Subvariants von Qu, Panke, Faraone, Julia, Evans, John P., Zou, Xue, Zheng, Yi-Min, Carlin, Claire, Bednash, Joseph S., Lozanski, Gerard, Mallampalli, Rama K., Saif, Linda J., Oltz, Eugene M., Mohler, Peter J., Gumina, Richard J., Liu, Shan-Lu

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Gene Regulatory Programs Conferring Phenotypic Identities to Human NK Cells von Collins, Patrick L., Cella, Marina, Porter, Sofia I., Li, Shasha, Gurewitz, Greer L., Hong, Henoch S., Johnson, R. Paul, Oltz, Eugene M., Colonna, Marco

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Distinct Gene Regulatory Pathways for Human Innate versus Adaptive Lymphoid Cells von Koues, Olivia I., Collins, Patrick L., Cella, Marina, Robinette, Michelle L., Porter, Sofia I., Pyfrom, Sarah C., Payton, Jacqueline E., Colonna, Marco, Oltz, Eugene M.

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Two Forms of Loops Generate the Chromatin Conformation of the Immunoglobulin Heavy-Chain Gene Locus von Guo, Changying, Gerasimova, Tatiana, Hao, Haiping, Ivanova, Irina, Chakraborty, Tirtha, Selimyan, Roza, Oltz, Eugene M., Sen, Ranjan

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Neutralization of SARS-CoV-2 Omicron sub-lineages BA.1, BA.1.1, and BA.2 von Evans, John P., Zeng, Cong, Qu, Panke, Faraone, Julia, Zheng, Yi-Min, Carlin, Claire, Bednash, Joseph S., Zhou, Tongqing, Lozanski, Gerard, Mallampalli, Rama, Saif, Linda J., Oltz, Eugene M., Mohler, Peter J., Xu, Kai, Gumina, Richard J., Liu, Shan-Lu

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Enhanced evasion of neutralizing antibody response by Omicron XBB.1.5, CH.1.1, and CA.3.1 variants von Qu, Panke, Faraone, Julia N., Evans, John P., Zheng, Yi-Min, Carlin, Claire, Anghelina, Mirela, Stevens, Patrick, Fernandez, Soledad, Jones, Daniel, Panchal, Ashish R., Saif, Linda J., Oltz, Eugene M., Zhang, Baoshan, Zhou, Tongqing, Xu, Kai, Gumina, Richard J., Liu, Shan-Lu

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DNA double-strand breaks induce H2Ax phosphorylation domains in a contact-dependent manner von Collins, Patrick L., Purman, Caitlin, Porter, Sofia I., Nganga, Vincent, Saini, Ankita, Hayer, Katharina E., Gurewitz, Greer L., Sleckman, Barry P., Bednarski, Jeffrey J., Bassing, Craig H., Oltz, Eugene M.

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The histone methyltransferase SETDB1 represses endogenous and exogenous retroviruses in B lymphocytes von Collins, Patrick L., Kyle, Katherine E., Egawa, Takeshi, Shinkai, Yoichi, Oltz, Eugene M.

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Enhancer Sequence Variants and Transcription-Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B-Cell Lymphoma von Koues, Olivia I., Kowalewski, Rodney A., Chang, Li-Wei, Pyfrom, Sarah C., Schmidt, Jennifer A., Luo, Hong, Sandoval, Luis E., Hughes, Tyler B., Bednarski, Jeffrey J., Cashen, Amanda F., Payton, Jacqueline E., Oltz, Eugene M.

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Immune evasion and membrane fusion of SARS-CoV-2 XBB subvariants EG.5.1 and XBB.2.3 von Faraone, Julia N, Qu, Panke, Goodarzi, Negin, Zheng, Yi-Min, Carlin, Claire, Saif, Linda J, Oltz, Eugene M, Xu, Kai, Jones, Daniel, Gumina, Richard J, Liu, Shan-Lu

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The Colonic Crypt Protects Stem Cells from Microbiota-Derived Metabolites von Kaiko, Gerard E., Ryu, Stacy H., Koues, Olivia I., Collins, Patrick L., Solnica-Krezel, Lilianna, Pearce, Edward J., Pearce, Erika L., Oltz, Eugene M., Stappenbeck, Thaddeus S.

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Continued evasion of neutralizing antibody response by Omicron XBB.1.16 von Faraone, Julia N., Qu, Panke, Zheng, Yi-Min, Carlin, Claire, Jones, Daniel, Panchal, Ashish R., Saif, Linda J., Oltz, Eugene M., Gumina, Richard J., Liu, Shan-Lu

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A B-Cell-Specific Enhancer Orchestrates Nuclear Architecture to Generate a Diverse Antigen Receptor Repertoire von Barajas-Mora, E. Mauricio, Kleiman, Eden, Xu, Jeffrey, Carrico, Nancy C., Lu, Hanbin, Oltz, Eugene M., Murre, Cornelis, Feeney, Ann J.

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Neutralization of SARS-CoV-2 Variants of Concern Harboring Q677H von Zeng, Cong, Evans, John P, Faraone, Julia N, Qu, Panke, Zheng, Yi-Min, Saif, Linda, Oltz, Eugene M, Lozanski, Gerard, Gumina, Richard J, Liu, Shan-Lu

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Deep sequencing of the murine IgH repertoire reveals complex regulation of nonrandom V gene rearrangement frequencies von Choi, Nancy M, Loguercio, Salvatore, Verma-Gaur, Jiyoti, Degner, Stephanie C, Torkamani, Ali, Su, Andrew I, Oltz, Eugene M, Artyomov, Maxim, Feeney, Ann J

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Distinct patterns of SARS-CoV-2 BA.2.87.1 and JN.1 variants in immune evasion, antigenicity, and cell-cell fusion von Li, Pei, Liu, Yajie, Faraone, Julia N, Hsu, Cheng Chih, Chamblee, Michelle, Zheng, Yi-Min, Carlin, Claire, Bednash, Joseph S, Horowitz, Jeffrey C, Mallampalli, Rama K, Saif, Linda J, Oltz, Eugene M, Jones, Daniel, Li, Jianrong, Gumina, Richard J, Liu, Shan-Lu

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Barrier-to-Autointegration Factor 1 Protects against a Basal cGAS-STING Response von Ma, Hongming, Qian, Wei, Bambouskova, Monika, Collins, Patrick L, Porter, Sofia I, Byrum, Andrea K, Zhang, Rong, Artyomov, Maxim, Oltz, Eugene M, Mosammaparast, Nima, Miner, Jonathan J, Diamond, Michael S

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Systems Approaches for Studying Immunity von Vahedi, Golnaz, Oltz, Eugene M

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Impaired neutralizing antibody response to COVID-19 mRNA vaccines in cancer patients von Zeng, Cong, Evans, John P, Reisinger, Sarah, Woyach, Jennifer, Liscynesky, Christina, Boghdadly, Zeinab El, Rubinstein, Mark P, Chakravarthy, Karthik, Saif, Linda, Oltz, Eugene M, Gumina, Richard J, Shields, Peter G, Li, Zihai, Liu, Shan-Lu

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