Status of Large-scale Analysis of Post-translational Modifications by Mass Spectrometry von Olsen, Jesper V., Mann, Matthias

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UbiSite approach for comprehensive mapping of lysine and N-terminal ubiquitination sites von Akimov, Vyacheslav, Barrio-Hernandez, Inigo, Hansen, Sten V. F., Hallenborg, Philip, Pedersen, Anna-Kathrine, Bekker-Jensen, Dorte B., Puglia, Michele, Christensen, Stine D. K., Vanselow, Jens T., Nielsen, Mogens M., Kratchmarova, Irina, Kelstrup, Christian D., Olsen, Jesper V., Blagoev, Blagoy

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Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral libraries von Bekker-Jensen, Dorte B., Bernhardt, Oliver M., Hogrebe, Alexander, Martinez-Val, Ana, Verbeke, Lynn, Gandhi, Tejas, Kelstrup, Christian D., Reiter, Lukas, Olsen, Jesper V.

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Off-Line High-pH Reversed-Phase Fractionation for In-Depth Phosphoproteomics von Batth, Tanveer S, Francavilla, Chiara, Olsen, Jesper V

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Protein Aggregation Capture on Microparticles Enables Multipurpose Proteomics Sample Preparation von Batth, Tanveer S., Tollenaere, MaximA.X., Rüther, Patrick, Gonzalez-Franquesa, Alba, Prabhakar, Bhargav S., Bekker-Jensen, Simon, Deshmukh, Atul S., Olsen, Jesper V.

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Interpreting pathways to discover cancer driver genes with Moonlight von Colaprico, Antonio, Olsen, Catharina, Bailey, Matthew H., Odom, Gabriel J., Terkelsen, Thilde, Silva, Tiago C., Olsen, André V., Cantini, Laura, Zinovyev, Andrei, Barillot, Emmanuel, Noushmehr, Houtan, Bertoli, Gloria, Castiglioni, Isabella, Cava, Claudia, Bontempi, Gianluca, Chen, Xi Steven, Papaleo, Elena

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Benchmarking common quantification strategies for large-scale phosphoproteomics von Hogrebe, Alexander, von Stechow, Louise, Bekker-Jensen, Dorte B., Weinert, Brian T., Kelstrup, Christian D., Olsen, Jesper V.

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Phosphoproteomic investigation of targets of protein phosphatases in EGFR signaling von Eguchi, Akihiro, Olsen, Jesper V.

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Performance Evaluation of the Q Exactive HF‑X for Shotgun Proteomics von Kelstrup, Christian D, Bekker-Jensen, Dorte B, Arrey, Tabiwang N, Hogrebe, Alexander, Harder, Alexander, Olsen, Jesper V

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Proteomic Analysis of Lysine Acetylation Sites in Rat Tissues Reveals Organ Specificity and Subcellular Patterns von Lundby, Alicia, Lage, Kasper, Weinert, Brian T., Bekker-Jensen, Dorte B., Secher, Anna, Skovgaard, Tine, Kelstrup, Christian D., Dmytriyev, Anatoliy, Choudhary, Chunaram, Lundby, Carsten, Olsen, Jesper V.

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Proteomic Investigations Reveal a Role for RNA Processing Factor THRAP3 in the DNA Damage Response von Beli, Petra, Lukashchuk, Natalia, Wagner, Sebastian A., Weinert, Brian T., Olsen, Jesper V., Baskcomb, Linda, Mann, Matthias, Jackson, Stephen P., Choudhary, Chunaram

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Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues von Lundby, Alicia, Secher, Anna, Lage, Kasper, Nordsborg, Nikolai B., Dmytriyev, Anatoliy, Lundby, Carsten, Olsen, Jesper V.

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Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions von Choudhary, Chunaram, Kumar, Chanchal, Gnad, Florian, Nielsen, Michael L, Rehman, Michael, Walther, Tobias C, Olsen, Jesper V, Mann, Matthias

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Functional Proteomics Defines the Molecular Switch Underlying FGF Receptor Trafficking and Cellular Outputs von Francavilla, Chiara, Rigbolt, Kristoffer T.G., Emdal, Kristina B., Carraro, Gianni, Vernet, Erik, Bekker-Jensen, Dorte B., Streicher, Werner, Wikström, Mats, Sundström, Michael, Bellusci, Saverio, Cavallaro, Ugo, Blagoev, Blagoy, Olsen, Jesper V.

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A Conserved Motif Provides Binding Specificity to the PP2A-B56 Phosphatase von Hertz, Emil Peter Thrane, Kruse, Thomas, Davey, Norman E., López-Méndez, Blanca, Sigurðsson, Jón Otti, Montoya, Guillermo, Olsen, Jesper V., Nilsson, Jakob

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In-gel digestion for mass spectrometric characterization of proteins and proteomes von Shevchenko, Andrej, Tomas, Henrik, Havli, Jan, Olsen, Jesper V, Mann, Matthias

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Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks von Olsen, Jesper V., Blagoev, Blagoy, Gnad, Florian, Macek, Boris, Kumar, Chanchal, Mortensen, Peter, Mann, Matthias

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A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics von Cox, Jürgen, Matic, Ivan, Hilger, Maximiliane, Nagaraj, Nagarjuna, Selbach, Matthias, Olsen, Jesper V, Mann, Matthias

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Ubiquitin-SUMO Circuitry Controls Activated Fanconi Anemia ID Complex Dosage in Response to DNA Damage von Gibbs-Seymour, Ian, Oka, Yasuyoshi, Rajendra, Eeson, Weinert, Brian T., Passmore, Lori A., Patel, Ketan J., Olsen, Jesper V., Choudhary, Chunaram, Bekker-Jensen, Simon, Mailand, Niels

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Optimized Fast and Sensitive Acquisition Methods for Shotgun Proteomics on a Quadrupole Orbitrap Mass Spectrometer von Kelstrup, Christian D, Young, Clifford, Lavallee, Richard, Nielsen, Michael L, Olsen, Jesper V

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