SparkSeq: fast, scalable and cloud-ready tool for the interactive genomic data analysis with nucleotide precision von Wiewiórka, Marek S, Messina, Antonio, Pacholewska, Alicja, Maffioletti, Sergio, Gawrysiak, Piotr, Okoniewski, Michał J

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rnaSeqMap: a Bioconductor package for RNA sequencing data exploration von Leśniewska, Anna, Okoniewski, Michał J

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Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations von Okoniewski, Michał J, Miller, Crispin J

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High correspondence between Affymetrix exon and standard expression arrays von Okoniewski, Michał J, Hey, Yvonne, Pepper, Stuart D, Miller, Crispin J

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Pramel7 mediates ground-state pluripotency through proteasomal–epigenetic combined pathways von Graf, Urs, Casanova, Elisa A., Wyck, Sarah, Dalcher, Damian, Gatti, Marco, Vollenweider, Eva, Okoniewski, Michal J., Weber, Fabienne A., Patel, Sameera S., Schmid, Marc W., Li, Jiwen, Sharif, Jafar, Wanner, Guido A., Koseki, Haruhiko, Wong, Jiemin, Pelczar, Pawel, Penengo, Lorenza, Santoro, Raffaella, Cinelli, Paolo

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Transcriptional analysis of South African cassava mosaic virus-infected susceptible and tolerant landraces of cassava highlights differences in resistance, basal defense and cell w... von Allie, Farhahna, Pierce, Erica J, Okoniewski, Michal J, Rey, Chrissie

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Early insights into the function of KIAA1199, a markedly overexpressed protein in human colorectal tumors von Tiwari, Amit, Schneider, Mirjam, Fiorino, Antonio, Haider, Ritva, Okoniewski, Michal J, Roschitzki, Bernd, Uzozie, Anuli, Menigatti, Mirco, Jiricny, Josef, Marra, Giancarlo

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Comprehensive analysis of affymetrix exon arrays using BioConductor von Okoniewski, Michał J, Miller, Crispin J

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Eight-channel iTRAQ Enables Comparison of the Activity of Six Leukemogenic Tyrosine Kinases von Pierce, Andrew, Unwin, Richard D., Evans, Caroline A., Griffiths, Stephen, Carney, Louise, Zhang, Liqun, Jaworska, Ewa, Lee, Chia-Fang, Blinco, David, Okoniewski, Michal J., Miller, Crispin J., Bitton, Danny A., Spooncer, Elaine, Whetton, Anthony D.

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Leonhard Med, a trusted research environment for processing sensitive research data von Okoniewski, Michal J., Wiegand, Anna, Schmid, Diana Coman, Bolliger, Christian, Bovino, Cristian, Belluco, Mattia, Wüst, Thomas, Byrde, Olivier, Maffioletti, Sergio, Rinn, Bernd

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Exon level integration of proteomics and microarray data von Bitton, Danny A, Okoniewski, Michał J, Connolly, Yvonne, Miller, Crispin J

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X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis von Yates, Tim, Okoniewski, Michał J, Miller, Crispin J

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PGC-1α determines light damage susceptibility of the murine retina von Egger, Anna, Samardzija, Marijana, Sothilingam, Vithiyanjali, Tanimoto, Naoyuki, Lange, Christina, Salatino, Silvia, Fang, Lei, Garcia-Garrido, Marina, Beck, Susanne, Okoniewski, Michal J, Neutzner, Albert, Seeliger, Mathias W, Grimm, Christian, Handschin, Christoph

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Cross-species genome wide expression analysis during pluripotent cell determination in mouse and rat preimplantation embryos von Casanova, Elisa A, Okoniewski, Michal J, Cinelli, Paolo

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Benchmarking distributed data warehouse solutions for storing genomic variant information von Wiewiórka, Marek S., Wysakowicz, Dawid P., Okoniewski, Michał J., Gambin, Tomasz

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The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets - improving meta-analysis and prediction of prognosis von Sims, Andrew H, Smethurst, Graeme J, Hey, Yvonne, Okoniewski, Michal J, Pepper, Stuart D, Howell, Anthony, Miller, Crispin J, Clarke, Robert B

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An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data von Okoniewski, Michał J, Yates, Tim, Dibben, Siân, Miller, Crispin J

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SwissPKcdw – A clinical data warehouse for the optimization of pediatric dosing regimens von Goers, Roland, Coman Schmid, Diana, Jäggi, Vera F., Paioni, Paolo, Okoniewski, Michal J., Parker, Althea, Bangerter, Beat, Georgakopoulou, Sofia, Sengstag, Thierry, Bielicki, Julia, Tilen, Romy, Vermeul, Swen, Krämer, Stefanie D., Berger, Christoph, Rinn, Bernd, Meyer zu Schwabedissen, Henriette E.

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Genes sharing the protein family domain decrease the performance of classification with RNA-seq genomic signatures von Leśniewska, Anna, Zyprych-Walczak, Joanna, Szabelska-Beręsewicz, Alicja, Okoniewski, Michal J

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Heterogeneous expression of ACE2 and TMPRRS2 in mesenchymal stromal cells von Generali, Melanie, Kehl, Debora, Wanner, Debora, Okoniewski, Michal J., Hoerstrup, Simon P., Cinelli, Paolo

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