RNA-seq: technical variability and sampling von McIntyre, Lauren M, Lopiano, Kenneth K, Morse, Alison M, Amin, Victor, Oberg, Ann L, Young, Linda J, Nuzhdin, Sergey V

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Cellular senescence mediates fibrotic pulmonary disease von Schafer, Marissa J., White, Thomas A., Iijima, Koji, Haak, Andrew J., Ligresti, Giovanni, Atkinson, Elizabeth J., Oberg, Ann L., Birch, Jodie, Salmonowicz, Hanna, Zhu, Yi, Mazula, Daniel L., Brooks, Robert W., Fuhrmann-Stroissnigg, Heike, Pirtskhalava, Tamar, Prakash, Y. S., Tchkonia, Tamara, Robbins, Paul D., Aubry, Marie Christine, Passos, João F., Kirkland, James L., Tschumperlin, Daniel J., Kita, Hirohito, LeBrasseur, Nathan K.

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Statistical Design of Quantitative Mass Spectrometry-Based Proteomic Experiments von Oberg, Ann L, Vitek, Olga

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The ratios of CD8+ T cells to CD4+CD25+ FOXP3+ and FOXP3- T cells correlate with poor clinical outcome in human serous ovarian cancer von Preston, Claudia C, Maurer, Matthew J, Oberg, Ann L, Visscher, Daniel W, Kalli, Kimberly R, Hartmann, Lynn C, Goode, Ellen L, Knutson, Keith L

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Biomarker Discovery and Validation: Statistical Considerations von Ou, Fang-Shu, Michiels, Stefan, Shyr, Yu, Adjei, Alex A., Oberg, Ann L.

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Challenges and Opportunities in Clinical Applications of Blood-Based Proteomics in Cancer von Bhawal, Ruchika, Oberg, Ann L., Zhang, Sheng, Kohli, Manish

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miRNA expression in colon polyps provides evidence for a multihit model of colon cancer von Oberg, Ann L, French, Amy J, Sarver, Aaron L, Subramanian, Subbaya, Morlan, Bruce W, Riska, Shaun M, Borralho, Pedro M, Cunningham, Julie M, Boardman, Lisa A, Wang, Liang, Smyrk, Thomas C, Asmann, Yan, Steer, Clifford J, Thibodeau, Stephen N

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A Clinician’s Guide to Bioinformatics for Next-Generation Sequencing von Larson, Nicholas Bradley, Oberg, Ann L., Adjei, Alex A., Wang, Liguo

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3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer von Asmann, Yan W, Klee, Eric W, Thompson, E Aubrey, Perez, Edith A, Middha, Sumit, Oberg, Ann L, Therneau, Terry M, Smith, David I, Poland, Gregory A, Wieben, Eric D, Kocher, Jean-Pierre A

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System-Wide Associations between DNA-Methylation, Gene Expression, and Humoral Immune Response to Influenza Vaccination von Zimmermann, Michael T, Oberg, Ann L, Grill, Diane E, Ovsyannikova, Inna G, Haralambieva, Iana H, Kennedy, Richard B, Poland, Gregory A

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Poly(adenosine diphosphate ribose) polymerase inhibitors induce autophagy‐mediated drug resistance in ovarian cancer cells, xenografts, and patient‐derived xenograft models von Santiago‐O’Farrill, Janice M., Weroha, S. John, Hou, Xiaonan, Oberg, Ann L., Heinzen, Ethan P., Maurer, Matthew J., Pang, Lan, Rask, Philip, Amaravadi, Ravi K., Becker, Sarah E., Romero, Ignacio, Rubio, Ma Jesús, Matias‐Guiu, Xavier, Santacana, Maria, Llombart‐Cussac, Antonio, Poveda, Andrés, Lu, Zhen, Bast, Robert C.

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Human colon cancer profiles show differential microRNA expression depending on mismatch repair status and are characteristic of undifferentiated proliferative states von Sarver, Aaron L, French, Amy J, Borralho, Pedro M, Thayanithy, Venugopal, Oberg, Ann L, Silverstein, Kevin A T, Morlan, Bruce W, Riska, Shaun M, Boardman, Lisa A, Cunningham, Julie M, Subramanian, Subbaya, Wang, Liang, Smyrk, Tom C, Rodrigues, Cecilia M P, Thibodeau, Stephen N, Steer, Clifford J

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Statistical methods for quantitative mass spectrometry proteomic experiments with labeling von Oberg, Ann L, Mahoney, Douglas W

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The impact of immunosenescence on humoral immune response variation after influenza A/H1N1 vaccination in older subjects von Haralambieva, Iana H, Painter, Scott D, Kennedy, Richard B, Ovsyannikova, Inna G, Lambert, Nathaniel D, Goergen, Krista M, Oberg, Ann L, Poland, Gregory A

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The DNA Cytosine Deaminase APOBEC3B is a Molecular Determinant of Platinum Responsiveness in Clear Cell Ovarian Cancer von Serebrenik, Artur A., Argyris, Prokopios P., Jarvis, Matthew C., Brown, William L., Bazzaro, Martina, Vogel, Rachel I., Erickson, Britt K., Lee, Sun-Hee, Goergen, Krista M., Maurer, Matthew J., Heinzen, Ethan P., Oberg, Ann L., Huang, Yajue, Hou, Xiaonan, Weroha, S. John, Kaufmann, Scott H., Harris, Reuben S.

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Overcoming platinum resistance in ovarian cancer by targeting pregnancy-associated plasma protein-A von Torres, Diogo, Hou, Xiaonan, Bale, Laurie, Heinzen, Ethan P, Maurer, Matthew J, Zanfagnin, Valentina, Oberg, Ann L, Conover, Cheryl, Weroha, S John

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Optimizing Mass Spectrometry Analyses: A Tailored Review on the Utility of Design of Experiments von Hecht, Elizabeth S., Oberg, Ann L., Muddiman, David C.

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Diagnostic and prognostic potential of the microbiome in ovarian cancer treatment response von Asangba, Abigail E., Chen, Jun, Goergen, Krista M., Larson, Melissa C., Oberg, Ann L., Casarin, Jvan, Multinu, Francesco, Kaufmann, Scott H., Mariani, Andrea, Chia, Nicholas, Walther-Antonio, Marina R. S.

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Leukocyte DNA methylation signature differentiates pancreatic cancer patients from healthy controls von Pedersen, Katrina S, Bamlet, William R, Oberg, Ann L, de Andrade, Mariza, Matsumoto, Martha E, Tang, Hui, Thibodeau, Stephen N, Petersen, Gloria M, Wang, Liang

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Prevalence of germ-line mutations in cancer genes among pancreatic cancer patients with a positive family history von Chaffee, Kari G., Oberg, Ann L., McWilliams, Robert R., Majithia, Neil, Allen, Brian A., Kidd, John, Singh, Nanda, Hartman, Anne-Renee, Wenstrup, Richard J., Petersen, Gloria M.

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