A choice, not an obligation: Releasing scientific software as open source should be the responsibility of the authors von Kappas, I, Promponas, VJ, Ouzounis, CA

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An efficient algorithm for large-scale detection of protein families von Enright, A. J., Van Dongen, S., Ouzounis, C. A.

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Protein interaction maps for complete genomes based on gene fusion events von Enright, Anton J., Iliopoulos, Ioannis, Kyrpides, Nikos C., Ouzounis, Christos A.

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PuReD-MCL: a graph-based PubMed document clustering methodology von Theodosiou, T., Darzentas, N., Angelis, L., Ouzounis, C. A.

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GeneRAGE: a robust algorithm for sequence clustering and domain detection von Enright, Anton J., Ouzounis, Christos A.

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BioLayout—an automatic graph layout algorithm for similarity visualization von Enright, Anton J., Ouzounis, Christos A.

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MjCyc: Rediscovering the pathway-genome landscape of the first sequenced archaeon, Methanocaldococcus (Methanococcus) jannaschii von Baltsavia, I., Stamoulos, G., Tziavaras, K., Bouas, C., Katikaridou, I., Dermaris, A., Kothari, A., Iliopoulos, I., Caspi, R., Karp, P.D., Kyrpides, N.C., Ouzounis, C.A.

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Transcription in Archaea von Kyrpides, Nikos C., Ouzounis, Christos A.

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A genome-wide survey of RS domain proteins von BOUCHER, LORRIE, OUZOUNIS, CHRISTOS A., ENRIGHT, ANTON J., BLENCOWE, BENJAMIN J.

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Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey von Promponas, Vasilis J., Ouzounis, Christos A., Iliopoulos, Ioannis

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Strain-specific genes of Helicobacter pylori: distribution, function and dynamics von Janssen, P J, Audit, B, Ouzounis, C A

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Functional versatility and molecular diversity of the metabolic map of Escherichia coli von Tsoka, S, Ouzounis, C A

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Whole‐genome sequence annotation: ‘Going wrong with confidence’ von Kyrpides, Nikos C., Ouzounis, Christos A.

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Identification of thermophilic species by the amino acid compositions deduced from their genomes von Kreil, D P, Ouzounis, C A

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On the evolution of arginases and related enzymes von OUZOUNIS, C. A, KYRPIDES, N. C

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Transcription-associated protein families are primarily taxon-specific von Coulson, Richard M.R., Enright, Anton J., Ouzounis, Christos A.

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Global properties of the metabolic map of Escherichia coli von Ouzounis, C A, Karp, P D

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Novel coding regions in four complete archaeal genomes von Raghavan, Sowmya, Ouzounis, Christos A.

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Prediction of protein interactions: metabolic enzymes are frequently involved in gene fusion von Tsoka, Sophia, Ouzounis, Christos A.

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Recent developments and future directions in computational genomics von Tsoka, Sophia, Ouzounis, Christos A

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