A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers von Quail, Michael A, Smith, Miriam, Coupland, Paul, Otto, Thomas D, Harris, Simon R, Connor, Thomas R, Bertoni, Anna, Swerdlow, Harold P, Gu, Yong

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REAPR: a universal tool for genome assembly evaluation von Hunt, Martin, Kikuchi, Taisei, Sanders, Mandy, Newbold, Chris, Berriman, Matthew, Otto, Thomas D

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Noise and Correlations in Parallel Perceptual Decision Making von Otto, Thomas U., Mamassian, Pascal

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Annotation and visualization of parasite, fungi and arthropod genomes with Companion von Haese-Hill, William, Crouch, Kathryn, Otto, Thomas D

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Circlator: automated circularization of genome assemblies using long sequencing reads von Hunt, Martin, Silva, Nishadi De, Otto, Thomas D, Parkhill, Julian, Keane, Jacqueline A, Harris, Simon R

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Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis von Alivernini, Stefano, MacDonald, Lucy, Elmesmari, Aziza, Finlay, Samuel, Tolusso, Barbara, Gigante, Maria Rita, Petricca, Luca, Di Mario, Clara, Bui, Laura, Perniola, Simone, Attar, Moustafa, Gessi, Marco, Fedele, Anna Laura, Chilaka, Sabarinadh, Somma, Domenico, Sansom, Stephen N., Filer, Andrew, McSharry, Charles, Millar, Neal L., Kirschner, Kristina, Nerviani, Alessandra, Lewis, Myles J., Pitzalis, Costantino, Clark, Andrew R., Ferraccioli, Gianfranco, Udalova, Irina, Buckley, Christopher D., Gremese, Elisa, McInnes, Iain B., Otto, Thomas D., Kurowska-Stolarska, Mariola

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Generation of antigenic diversity in Plasmodium falciparum by structured rearrangement of Var genes during mitosis von Claessens, Antoine, Hamilton, William L, Kekre, Mihir, Otto, Thomas D, Faizullabhoy, Adnan, Rayner, Julian C, Kwiatkowski, Dominic

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ABACAS: algorithm-based automatic contiguation of assembled sequences von Assefa, Samuel, Keane, Thomas M., Otto, Thomas D., Newbold, Chris, Berriman, Matthew

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Extreme mutation bias and high AT content in Plasmodium falciparum von Hamilton, William L, Claessens, Antoine, Otto, Thomas D, Kekre, Mihir, Fairhurst, Rick M, Rayner, Julian C, Kwiatkowski, Dominic

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Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes von Oyola, Samuel O, Otto, Thomas D, Gu, Yong, Maslen, Gareth, Manske, Magnus, Campino, Susana, Turner, Daniel J, Macinnis, Bronwyn, Kwiatkowski, Dominic P, Swerdlow, Harold P, Quail, Michael A

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Single-cell transcriptomic analysis of bloodstream Trypanosoma brucei reconstructs cell cycle progression and developmental quorum sensing von Briggs, Emma M., Rojas, Federico, McCulloch, Richard, Matthews, Keith R., Otto, Thomas D.

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Principles of multisensory behavior von Otto, Thomas U, Dassy, Brice, Mamassian, Pascal

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Safety for Particle Accelerators von Otto, Thomas

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Semantic congruency modulates the speed-up of multisensory responses von Roberts, Kalvin, Jentzsch, Ines, Otto, Thomas U.

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Using topic modeling to detect cellular crosstalk in scRNA-seq von Pancheva, Alexandrina, Wheadon, Helen, Rogers, Simon, Otto, Thomas D

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Predicting crypto‐currencies using sparse non‐Gaussian state space models von Hotz‐Behofsits, Christian, Huber, Florian, Zörner, Thomas Otto

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Uncovering the essential genes of the human malaria parasite Plasmodium falciparum by saturation mutagenesis von Zhang, Min, Wang, Chengqi, Otto, Thomas D, Oberstaller, Jenna, Liao, Xiangyun, Adapa, Swamy R, Udenze, Kenneth, Bronner, Iraad F, Casandra, Deborah, Mayho, Matthew, Brown, Jacqueline, Li, Suzanne, Swanson, Justin, Rayner, Julian C, Jiang, Rays H Y, Adams, John H

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Varia: a tool for prediction, analysis and visualisation of variable genes von Mackenzie, Gavin, Jensen, Rasmus W, Lavstsen, Thomas, Otto, Thomas D

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IVA: accurate de novo assembly of RNA virus genomes von Hunt, Martin, Gall, Astrid, Ong, Swee Hoe, Brener, Jacqui, Ferns, Bridget, Goulder, Philip, Nastouli, Eleni, Keane, Jacqueline A, Kellam, Paul, Otto, Thomas D

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Enhancement of the thermoelectric properties of PEDOT:PSS thin films by post-treatment von Luo, Jinji, Billep, Detlef, Waechtler, Thomas, Otto, Thomas, Toader, Marius, Gordan, Ovidiu, Sheremet, Evgeniya, Martin, Joerg, Hietschold, Michael, Zahn, Dietrich R. T., Gessner, Thomas

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