Status of Large-scale Analysis of Post-translational Modifications by Mass Spectrometry von Olsen, Jesper V., Mann, Matthias

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UbiSite approach for comprehensive mapping of lysine and N-terminal ubiquitination sites von Akimov, Vyacheslav, Barrio-Hernandez, Inigo, Hansen, Sten V. F., Hallenborg, Philip, Pedersen, Anna-Kathrine, Bekker-Jensen, Dorte B., Puglia, Michele, Christensen, Stine D. K., Vanselow, Jens T., Nielsen, Mogens M., Kratchmarova, Irina, Kelstrup, Christian D., Olsen, Jesper V., Blagoev, Blagoy

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Protein Aggregation Capture on Microparticles Enables Multipurpose Proteomics Sample Preparation von Batth, Tanveer S., Tollenaere, MaximA.X., Rüther, Patrick, Gonzalez-Franquesa, Alba, Prabhakar, Bhargav S., Bekker-Jensen, Simon, Deshmukh, Atul S., Olsen, Jesper V.

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A Compact Quadrupole-Orbitrap Mass Spectrometer with FAIMS Interface Improves Proteome Coverage in Short LC Gradients von Bekker-Jensen, Dorte B., Martínez-Val, Ana, Steigerwald, Sophia, Rüther, Patrick, Fort, Kyle L., Arrey, Tabiwang N., Harder, Alexander, Makarov, Alexander, Olsen, Jesper V.

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Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral libraries von Bekker-Jensen, Dorte B., Bernhardt, Oliver M., Hogrebe, Alexander, Martinez-Val, Ana, Verbeke, Lynn, Gandhi, Tejas, Kelstrup, Christian D., Reiter, Lukas, Olsen, Jesper V.

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Off-Line High-pH Reversed-Phase Fractionation for In-Depth Phosphoproteomics von Batth, Tanveer S, Francavilla, Chiara, Olsen, Jesper V

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Proteomic Investigations Reveal a Role for RNA Processing Factor THRAP3 in the DNA Damage Response von Beli, Petra, Lukashchuk, Natalia, Wagner, Sebastian A., Weinert, Brian T., Olsen, Jesper V., Baskcomb, Linda, Mann, Matthias, Jackson, Stephen P., Choudhary, Chunaram

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Systematic Optimization of Automated Phosphopeptide Enrichment for High-Sensitivity Phosphoproteomics von Bortel, Patricia, Piga, Ilaria, Koenig, Claire, Gerner, Christopher, Martinez-Val, Ana, Olsen, Jesper V.

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Global and Site-Specific Quantitative Phosphoproteomics : Principles and Applications von MACEK, Boris, MANN, Matthias, OLSEN, Jesper V

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Benchmarking common quantification strategies for large-scale phosphoproteomics von Hogrebe, Alexander, von Stechow, Louise, Bekker-Jensen, Dorte B., Weinert, Brian T., Kelstrup, Christian D., Olsen, Jesper V.

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A Conserved Motif Provides Binding Specificity to the PP2A-B56 Phosphatase von Hertz, Emil Peter Thrane, Kruse, Thomas, Davey, Norman E., López-Méndez, Blanca, Sigurðsson, Jón Otti, Montoya, Guillermo, Olsen, Jesper V., Nilsson, Jakob

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Proteomic Analysis of Lysine Acetylation Sites in Rat Tissues Reveals Organ Specificity and Subcellular Patterns von Lundby, Alicia, Lage, Kasper, Weinert, Brian T., Bekker-Jensen, Dorte B., Secher, Anna, Skovgaard, Tine, Kelstrup, Christian D., Dmytriyev, Anatoliy, Choudhary, Chunaram, Lundby, Carsten, Olsen, Jesper V.

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Phosphoproteomic investigation of targets of protein phosphatases in EGFR signaling von Eguchi, Akihiro, Olsen, Jesper V.

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Recent advances in kinase signaling network profiling by mass spectrometry von Franciosa, Giulia, Locard-Paulet, Marie, Jensen, Lars J., Olsen, Jesper V.

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Performance Evaluation of the Q Exactive HF‑X for Shotgun Proteomics von Kelstrup, Christian D, Bekker-Jensen, Dorte B, Arrey, Tabiwang N, Hogrebe, Alexander, Harder, Alexander, Olsen, Jesper V

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Functional Proteomics Defines the Molecular Switch Underlying FGF Receptor Trafficking and Cellular Outputs von Francavilla, Chiara, Rigbolt, Kristoffer T.G., Emdal, Kristina B., Carraro, Gianni, Vernet, Erik, Bekker-Jensen, Dorte B., Streicher, Werner, Wikström, Mats, Sundström, Michael, Bellusci, Saverio, Cavallaro, Ugo, Blagoev, Blagoy, Olsen, Jesper V.

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Obtaining Complete Human Proteomes von Martinez-Val, Ana, Guzmán, Ulises H, Olsen, Jesper V

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Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment von Cox, Jürgen, Neuhauser, Nadin, Michalski, Annette, Scheltema, Richard A, Olsen, Jesper V, Mann, Matthias

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Optimal analytical strategies for sensitive and quantitative phosphoproteomics using TMT‐based multiplexing von Koenig, Claire, Martinez‐Val, Ana, Franciosa, Giulia, Olsen, Jesper V.

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Digging deeper into ancient skeletal proteomes through consecutive digestion with multiple proteases von Fagernäs, Zandra, Troché, Gaudry, Olsen, Jesper V., Welker, Frido

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