Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis von Yurtseven, Alper, Buyanova, Sofia, Agrawal, Amay Ajaykumar, Bochkareva, Olga O, Kalinina, Olga V

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MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variants von Srikakulam, Sanjay K, Keller, Sebastian, Dabbaghie, Fawaz, Bals, Robert, Kalinina, Olga V

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DIGGER: exploring the functional role of alternative splicing in protein interactions von Louadi, Zakaria, Yuan, Kevin, Gress, Alexander, Tsoy, Olga, Kalinina, Olga V, Baumbach, Jan, Kacprowski, Tim, List, Markus

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Phylogenetic inference of changes in amino acid propensities with single-position resolution von Klink, Galya V, Kalinina, Olga V, Bazykin, Georgii A

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Characterization of the Stereoselective P450 Enzyme BotCYP Enables the In Vitro Biosynthesis of the Bottromycin Core Scaffold von Adam, Sebastian, Franz, Laura, Milhim, Mohammed, Bernhardt, Rita, Kalinina, Olga V, Koehnke, Jesko

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An extended catalogue of tandem alternative splice sites in human tissue transcriptomes von Mironov, Aleksei, Denisov, Stepan, Gress, Alexander, Kalinina, Olga V, Pervouchine, Dmitri D

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SphereCon—a method for precise estimation of residue relative solvent accessible area from limited structural information von Gress, Alexander, Kalinina, Olga V

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SPCS1-Dependent E2-p7 processing determines HCV Assembly efficiency von Alzahrani, Nabeel, Wu, Ming-Jhan, Sousa, Carla F, Kalinina, Olga V, Welsch, Christoph, Yi, MinKyung

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The bottromycin epimerase BotH defines a group of atypical α/β-hydrolase-fold enzymes von Sikandar, Asfandyar, Franz, Laura, Adam, Sebastian, Santos-Aberturas, Javier, Horbal, Liliya, Luzhetskyy, Andriy, Truman, Andrew W., Kalinina, Olga V., Koehnke, Jesko

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Detection of atypical genes in virus families using a one-class SVM von Metzler, Saskia, Kalinina, Olga V

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Guiding questions to avoid data leakage in biological machine learning applications von Bernett, Judith, Blumenthal, David B., Grimm, Dominik G., Haselbeck, Florian, Joeres, Roman, Kalinina, Olga V., List, Markus

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Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics Mycoplanecins von Fu, Chengzhang, Liu, Yunkun, Walt, Christine, Rasheed, Sari, Bader, Chantal D., Lukat, Peer, Neuber, Markus, Haeckl, F. P. Jake, Blankenfeldt, Wulf, Kalinina, Olga V., Müller, Rolf

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Modeling the Effect of Hydrophobicity on the Passive Permeation of Solutes across a Bacterial Model Membrane von Sousa, Carla F., Kamal, Mohamed A.M., Richter, Robert, Elamaldeniya, Kalanika, Hartmann, Rolf W., Empting, Martin, Lehr, Claus-Michael, Kalinina, Olga V.

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Artificial intelligence for natural product drug discovery von Mullowney, Michael W., Duncan, Katherine R., Elsayed, Somayah S., Garg, Neha, van der Hooft, Justin J. J., Martin, Nathaniel I., Meijer, David, Terlouw, Barbara R., Biermann, Friederike, Blin, Kai, Durairaj, Janani, Gorostiola González, Marina, Helfrich, Eric J. N., Huber, Florian, Leopold-Messer, Stefan, Rajan, Kohulan, de Rond, Tristan, van Santen, Jeffrey A., Sorokina, Maria, Balunas, Marcy J., Beniddir, Mehdi A., van Bergeijk, Doris A., Carroll, Laura M., Clark, Chase M., Clevert, Djork-Arné, Dejong, Chris A., Du, Chao, Ferrinho, Scarlet, Grisoni, Francesca, Hofstetter, Albert, Jespers, Willem, Kalinina, Olga V., Kautsar, Satria A., Kim, Hyunwoo, Leao, Tiago F., Masschelein, Joleen, Rees, Evan R., Reher, Raphael, Reker, Daniel, Schwaller, Philippe, Segler, Marwin, Skinnider, Michael A., Walker, Allison S., Willighagen, Egon L., Zdrazil, Barbara, Ziemert, Nadine, Goss, Rebecca J. M., Guyomard, Pierre, Volkamer, Andrea, Gerwick, William H., Kim, Hyun Uk, Müller, Rolf, van Wezel, Gilles P., van Westen, Gerard J. P., Hirsch, Anna K. H., Linington, Roger G., Robinson, Serina L., Medema, Marnix H.

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Non-active site mutants of HIV-1 protease influence resistance and sensitisation towards protease inhibitors von Bastys, Tomas, Gapsys, Vytautas, Walter, Hauke, Heger, Eva, Doncheva, Nadezhda T, Kaiser, Rolf, de Groot, Bert L, Kalinina, Olga V

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GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILES von Joeres, Roman, Bojar, Daniel, Kalinina, Olga V.

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Adaptation of a Bacterial Multidrug Resistance System Revealed by the Structure and Function of AlbA von Sikandar, Asfandyar, Cirnski, Katarina, Testolin, Giambattista, Volz, Carsten, Brönstrup, Mark, Kalinina, Olga V, Müller, Rolf, Koehnke, Jesko

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StructMAn: annotation of single-nucleotide polymorphisms in the structural context von Gress, Alexander, Ramensky, Vasily, Büch, Joachim, Keller, Andreas, Kalinina, Olga V

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The Significance of Phenotyping and Quantification of Plasma Extracellular Vesicles Levels Using High-Sensitivity Flow Cytometry during COVID-19 Treatment von Kudryavtsev, Igor, Kalinina, Olga, Bezrukikh, Vadim, Melnik, Olesya, Golovkin, Alexey

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A shift of dynamic equilibrium between the KIT active and inactive states causes drug resistance von Srikakulam, Sanjay K., Bastys, Tomas, Kalinina, Olga V.

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